7S6U | pdb_00007s6u

Leishmania infantum Glycogen Synthase Kinase 3 beta bound to AZD5438

• PDB DOI: https://doi.org/10.2210/pdb7S6U/pdb

• Classification: TRANSFERASE/INHIBITOR
• Organism(s): Leishmania infantum
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2021-09-15 Released: 2022-11-09 
• Deposition Author(s): dos Reis, C.V., Ramos, P.Z., Counago, R.M.
• Funding Organization(s): Sao Paulo Research Foundation (FAPESP), Brazilian National Council for Scientific and Technological Development (CNPq)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.74 Å
• R-Value Free: 
  0.200 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.173 (Depositor), 0.180 (DCC) 
• R-Value Observed: 
  0.175 (Depositor) 

Starting Model: experimental

Literature

Leishmania infantum Glycogen Synthase Kinase 3 beta bound to AZD5438

Ramos, P.Z., dos Reis, C.V., Counago, R.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 41.63 kDa 
• Atom Count: 2,954 
• Modeled Residue Count: 351 
• Deposited Residue Count: 356 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycogen synthase kinase 3	A	356	Leishmania infantum	Mutation(s): 0  Gene Names: GSK3, LINF_180007700, LINJ_18_0270 EC: 2.7.11.1
UniProt
Find proteins for A4HXQ3 (Leishmania infantum) Explore A4HXQ3  Go to UniProtKB:  A4HXQ3

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FB8	B [auth A]	4-(2-methyl-3-propan-2-yl-imidazol-4-yl)-~{N}-(4-methylsulfonylphenyl)pyrimidin-2-amine C18 H21 N5 O2 S WJRRGYBTGDJBFX-UHFFFAOYSA-N
CAC	F [auth A]	CACODYLATE ION C2 H6 As O2 OGGXGZAMXPVRFZ-UHFFFAOYSA-M
EDO	C [auth A], D [auth A], E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
PTR	A	L-PEPTIDE LINKING	C9 H12 N O6 P		TYR

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.74 Å
• R-Value Free:  0.200 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.173 (Depositor), 0.180 (DCC) 
• R-Value Observed: 0.175 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 156.368	α = 90
b = 39.519	β = 100.53
c = 62.608	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-11-09 
Deposition Author(s): dos Reis, C.V., Ramos, P.Z., Counago, R.M.

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Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2013/50724-5
Brazilian National Council for Scientific and Technological Development (CNPq)	Brazil	465651/2014-3
Sao Paulo Research Foundation (FAPESP)	Brazil	2014/50897-0

Revision History  

• Version 1.0: 2022-11-09
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Refinement description
• Version 1.2: 2023-11-15
  Changes: Data collection
• Version 1.3: 2024-10-16
  Changes: Structure summary