9DD8 | pdb_00009dd8

Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
D [auth B],
G [auth C]		PF00606Herpesvirus Glycoprotein B ectodomain (Glycoprotein_B)Herpesvirus Glycoprotein B ectodomainThis domain corresponds to the ectodomain of glycoprotein B according to ECOD. Domain
A,
D [auth B],
G [auth C]		PF17417Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2)Herpesvirus Glycoprotein B PH-like domainThis domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. Domain
A,
D [auth B],
G [auth C]		PF17416Herpesvirus Glycoprotein B (Glycoprot_B_PH1)Herpesvirus Glycoprotein BThis domain has a PH-like fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
D [auth B],
G [auth C]		Glycoprotein B-
B [auth H],
E [auth I],
H [auth J]		D48 heavy chain---
C [auth L],
F [auth M],
I [auth N]		D48 light chain---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
D [auth B],
G [auth C]		IPR000234Herpesvirus Glycoprotein BFamily
A,
D [auth B],
G [auth C]		IPR035381Herpesvirus Glycoprotein B, PH-like domain 2Domain
A,
D [auth B],
G [auth C]		IPR035377Herpesvirus Glycoprotein B, PH-like domain 1Domain
A,
D [auth B],
G [auth C]		IPR055341Herpesvirus glycoprotein B ectodomain C-terminalDomain
A,
D [auth B],
G [auth C]		IPR038631Herpesvirus Glycoprotein B, PH-like domain 2 superfamilyHomologous Superfamily