9ZRU | pdb_00009zru

Experimental Data Snapshot

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Kanai, T., Gorman, J.

To be published.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HA1	A, C [auth B], E [auth C]	334	Influenza A virus	Mutation(s): 0 Gene Names: HA
UniProt
Find proteins for A0A8K2AP79 (Influenza A virus) Explore A0A8K2AP79 Go to UniProtKB: A0A8K2AP79
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8K2AP79
Glycosylation
Glycosylation Sites: 11	Glycosylation Focus chain A Focus chain C [auth B] Focus chain E [auth C]
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
HA2	B [auth a], D [auth b], F [auth c]	238	Influenza A virus	Mutation(s): 0 Gene Names: HA
UniProt
Find proteins for A0A5B8WI41 (Influenza A virus) Explore A0A5B8WI41 Go to UniProtKB: A0A5B8WI41
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A5B8WI41
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain B [auth a] Focus chain D [auth b] Focus chain F [auth c]
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	AA [auth X], DA [auth d], FA [auth f], G [auth D], J [auth G], AA [auth X], DA [auth d], FA [auth f], G [auth D], J [auth G], L [auth I], Q [auth N], T [auth Q], V [auth S]	2		N-Glycosylation	Interactions Focus chain AA [auth X] Focus chain DA [auth d] Focus chain FA [auth f] Focus chain G [auth D] Focus chain J [auth G] Focus chain L [auth I] Focus chain Q [auth N] Focus chain T [auth Q] Focus chain V [auth S] Interactions & Density Focus chain AA [auth X] Focus chain DA [auth d] Focus chain FA [auth f] Focus chain G [auth D] Focus chain J [auth G] Focus chain L [auth I] Focus chain Q [auth N] Focus chain T [auth Q] Focus chain V [auth S]
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	BA [auth Y], H [auth E], R [auth O]	4		N-Glycosylation	Interactions Focus chain BA [auth Y] Focus chain H [auth E] Focus chain R [auth O] Interactions & Density Focus chain BA [auth Y] Focus chain H [auth E] Focus chain R [auth O]
Glycosylation Resources
GlyTouCan: G22573RC GlyCosmos: G22573RC GlyGen: G22573RC

Entity ID: 5
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	CA [auth Z], I [auth F], S [auth P]	5		N-Glycosylation	Interactions Focus chain CA [auth Z] Focus chain I [auth F] Focus chain S [auth P] Interactions & Density Focus chain CA [auth Z] Focus chain I [auth F] Focus chain S [auth P]
Glycosylation Resources
GlyTouCan: G22768VO GlyCosmos: G22768VO GlyGen: G22768VO

Entity ID: 6
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	EA [auth e], GA [auth g], IA [auth i], K [auth H], M [auth J], EA [auth e], GA [auth g], IA [auth i], K [auth H], M [auth J], O [auth L], U [auth R], W [auth T], Y [auth V]	3		N-Glycosylation	Interactions Focus chain EA [auth e] Focus chain GA [auth g] Focus chain IA [auth i] Focus chain K [auth H] Focus chain M [auth J] Focus chain O [auth L] Focus chain U [auth R] Focus chain W [auth T] Focus chain Y [auth V] Interactions & Density Focus chain EA [auth e] Focus chain GA [auth g] Focus chain IA [auth i] Focus chain K [auth H] Focus chain M [auth J] Focus chain O [auth L] Focus chain U [auth R] Focus chain W [auth T] Focus chain Y [auth V]
Glycosylation Resources
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE

Entity ID: 7
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	HA [auth h], N [auth K], X [auth U]	4		N-Glycosylation	Interactions Focus chain HA [auth h] Focus chain N [auth K] Focus chain X [auth U] Interactions & Density Focus chain HA [auth h] Focus chain N [auth K] Focus chain X [auth U]
Glycosylation Resources
GlyTouCan: G81315DD GlyCosmos: G81315DD GlyGen: G81315DD

Entity ID: 8
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	JA [auth j], P [auth M], Z [auth W]	7		N-Glycosylation	Interactions Focus chain JA [auth j] Focus chain P [auth M] Focus chain Z [auth W] Interactions & Density Focus chain JA [auth j] Focus chain P [auth M] Focus chain Z [auth W]
Glycosylation Resources
GlyTouCan: G55220VL GlyCosmos: G55220VL GlyGen: G55220VL

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain KA [auth A] SDF format, chain OA [auth C] SDF format, chain PA [auth C] SDF format, chain NA [auth B] SDF format, chain MA [auth B] SDF format, chain LA [auth A] MOL2 format, chain KA [auth A] MOL2 format, chain OA [auth C] MOL2 format, chain PA [auth C] MOL2 format, chain NA [auth B] MOL2 format, chain MA [auth B] MOL2 format, chain LA [auth A] mmCIF format, chain KA [auth A] mmCIF format, chain OA [auth C] mmCIF format, chain PA [auth C] mmCIF format, chain NA [auth B] mmCIF format, chain MA [auth B] mmCIF format, chain LA [auth A]	KA [auth A] LA [auth A] MA [auth B] NA [auth B] OA [auth C] KA [auth A], LA [auth A], MA [auth B], NA [auth B], OA [auth C], PA [auth C]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain KA [auth A] Focus chain LA [auth A] Focus chain MA [auth B] Focus chain NA [auth B] Focus chain OA [auth C] Focus chain PA [auth C] Interactions & Density Focus chain KA [auth A] Focus chain LA [auth A] Focus chain MA [auth B] Focus chain NA [auth B] Focus chain OA [auth C] Focus chain PA [auth C]