9Y7E | pdb_00009y7e

Covalent stabilizer of the interaction between 14-3-3 sigma and Estrogen receptor-alpha peptide

• PDB DOI: https://doi.org/10.2210/pdb9Y7E/pdb

• Classification: PROTEIN BINDING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2025-09-09 Released: 2026-08-26 
• Deposition Author(s): Knapp, M.S., Tang, J.Y.
• Funding Organization(s): Not funded

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free: 
  0.266 (Depositor), 0.247 (DCC) 
• R-Value Work: 
  0.231 (Depositor), 0.218 (DCC) 
• R-Value Observed: 
  0.233 (Depositor) 

Starting Model: experimental

Literature

Covalent Stabilizers of the Interaction Between 14-3-3 sigma

Jain, R., Knapp, M., Kochanek, S.E., Lewis, A., McGregor, L.M., Stojkovic, V., Tang, J., Tsang, T., Yan, K., Yifru, A., Zhu, Q., Fabbiani, F., Feng, G., Frank, A.O., Fuller, J., Jahnke, W., Jansen, J.M., Jo, J., Li, M., Lipps, J., Lu, Y., Mladenovic, T., Piechon, P., Rogemoser, P., Wang, F., Yang, S., Skepper, C.K.

(2026) ACS Med Chem Lett 

• DOI: https://doi.org/10.1021/acsmedchemlett.6c00325

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 4-mer - A2B1C1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 60.1 kDa 
• Atom Count: 3,946 
• Modeled Residue Count: 473 
• Deposited Residue Count: 526 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
14-3-3 protein sigma	A, B [auth C]	248	Homo sapiens	Mutation(s): 0  Gene Names: SFN, HME1
UniProt & NIH Common Fund Data Resources
Find proteins for P31947 (Homo sapiens) Explore P31947  Go to UniProtKB:  P31947
PHAROS:  P31947 GTEx:  ENSG00000175793

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Estrogen receptor Alpha Peptide	C [auth X], D [auth Y]	15	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P03372 (Homo sapiens) Explore P03372  Go to UniProtKB:  P03372
PHAROS:  P03372 GTEx:  ENSG00000091831

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1CSY( Subject of Investigation/LOI)	E [auth A], F [auth C]	(2S)-1-[(3R,5S)-4-acetyl-3,5-dimethylpiperazin-1-yl]-2-(4-chlorophenyl)-2-[1-(1-methyl-1H-pyrazole-4-carbonyl)piperidin-4-yl]ethan-1-one C26 H34 Cl N5 O3 XHIYOCZKADMLPG-NXMSCROESA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
TPO	C [auth X], D [auth Y]	L-PEPTIDE LINKING	C4 H10 N O6 P		THR

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free:  0.266 (Depositor), 0.247 (DCC) 
• R-Value Work:  0.231 (Depositor), 0.218 (DCC) 
• R-Value Observed: 0.233 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.091	α = 90
b = 137.098	β = 90
c = 161.806	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
PHASER	phasing
PDB_EXTRACT	data extraction
autoPROC	data reduction
Aimless	data scaling

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2026-08-26 
Deposition Author(s): Knapp, M.S., Tang, J.Y.

---

Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2026-08-26
  Type: Initial release