9H9S | pdb_00009h9s

Crystal structure of a lectin-like protein from Ustilago maydis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 
    0.216 (Depositor), 0.218 (DCC) 
  • R-Value Work: 
    0.188 (Depositor), 0.194 (DCC) 
  • R-Value Observed: 
    0.190 (Depositor) 

wwPDB Validation   3D Report Full Report


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Literature

Structural and Functional Analysis of the Lectin-like Protein Llp1 Secreted by Ustilago maydis upon Infection of Maize.

Christ, M.Rubio Elizalde, I.Weiland, P.Kern, A.Iwen, T.Mais, C.N.Pane-Farre, J.Kiontke, S.Altegoer, F.Freitag, J.Bange, G.

(2025) J Fungi (Basel) 11

  • DOI: https://doi.org/10.3390/jof11020164
  • Primary Citation of Related Structures:  
    9H9S

  • PubMed Abstract: 

    The biotrophic fungus Ustilago maydis , which causes smut disease in maize, secretes numerous proteins upon plant colonization. Some of them, termed effectors, help to evade plant defenses and manipulate cellular processes within the host. The function of many proteins specifically secreted during infection remains elusive. In this study, we biochemically characterized one such protein, UMAG_00027, that is highly expressed during plant infection. We show that UMAG_00027 is a secreted protein with a lectin-like fold and therefore term it Llp1 (lectin-like-protein 1). Llp1 decorated the fungal cell wall of cells grown in axenic culture or proliferating in planta, which is in agreement with its potential sugar-binding ability. We were unable to identify the precise sugar moieties that are bound by Llp1. CRISPR/Cas9-mediated deletion of llp1 reveals that the gene is not essential for fungal virulence. A structural search shows the presence of several other lectin-like proteins in U. maydis that might compensate for the function of Llp1 in ∆ llp1 mutants. We therefore speculate that Llp1 is part of a family of lectin-like proteins with redundant functions.


  • Organizational Affiliation
    • Center for Synthetic Microbiology (SYNMIKRO), Departments of Biology and Chemistry, University of Marburg, Karl-von-Frisch Straße 14, 35043 Marburg, Germany.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Llp1237Mycosarcoma maydisMutation(s): 0 
Gene Names: UMAG_00027
UniProt
Find proteins for A0A0D1E6R1 (Mycosarcoma maydis)
Explore A0A0D1E6R1 
Go to UniProtKB:  A0A0D1E6R1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0D1E6R1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
B [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free:  0.216 (Depositor), 0.218 (DCC) 
  • R-Value Work:  0.188 (Depositor), 0.194 (DCC) 
  • R-Value Observed: 0.190 (Depositor) 
Space Group: F 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 159.95α = 90
b = 159.95β = 90
c = 159.95γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union101019765

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-20
    Type: Initial release