9EX9 | pdb_00009ex9

Cryo EM map and model of the vaccinia minimal RNA polymerase

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target)

Grimm, C., Jungwirth, S., Fischer, U.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 147 kDa polypeptide1,286Orthopoxvirus vacciniaMutation(s): 3 
Gene Names: OPG105, RPO147, J6R
EC: 2.7.7.6
UniProt
Find proteins for P20504 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP20504
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 133 kDa polypeptide1,164Orthopoxvirus vacciniaMutation(s): 2 
Gene Names: OPG151, RPO132, A24R
EC: 2.7.7.6
UniProt
Find proteins for P68694 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP68694
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 35 kDa subunit305Orthopoxvirus vacciniaMutation(s): 1 
Gene Names: OPG156, RPO35, A29L
EC: 2.7.7.6
UniProt
Find proteins for P21087 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP21087
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 22 kDa subunitD [auth E]186Orthopoxvirus vacciniaMutation(s): 1 
Gene Names: OPG103, RPO22, J4R
EC: 2.7.7.6
UniProt
Find proteins for P68608 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP68608
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 19 kDa subunitE [auth F]164Orthopoxvirus vacciniaMutation(s): 0 
Gene Names: OPG131, RPO19, A5R
EC: 2.7.7.6
UniProt
Find proteins for P68610 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP68610
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 18 kDa subunitF [auth G]161Orthopoxvirus vacciniaMutation(s): 0 
Gene Names: OPG119, RPO18, D7R
EC: 2.7.7.6
UniProt
Find proteins for P21034 (Vaccinia virus (strain Copenhagen))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 7 kDa subunitG [auth J]63Orthopoxvirus vacciniaMutation(s): 0 
Gene Names: OPG090, RPO7, G5.5R
EC: 2.7.7.6
UniProt
Find proteins for P68315 (Vaccinia virus (strain Copenhagen))
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UniProt GroupP68315
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DNA-directed RNA polymerase 30 kDa polypeptideH [auth S]259Orthopoxvirus vacciniaMutation(s): 0 
Gene Names: OPG066, RPO30, E4L
EC: 2.7.7.6
UniProt
Find proteins for P21082 (Vaccinia virus (strain Copenhagen))
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.1

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-16
    Type: Initial release