8ZXM | pdb_00008zxm

Cryo-EM structure of human GLUT9 bound to urate


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis of urate transport by glucose transporter 9.

Matsushita, D.Toyoda, Y.Lee, Y.Aoi, M.Matsuo, H.Takada, T.Nishizawa, T.

(2025) Cell Rep 44: 115514-115514

  • DOI: https://doi.org/10.1016/j.celrep.2025.115514
  • Primary Citation of Related Structures:  
    8ZXM, 8ZXN

  • PubMed Abstract: 

    Glucose transporter 9 (GLUT9) is a critical urate transporter involved in renal reabsorption, playing a pivotal role in regulating physiological urate levels and representing a potential therapeutic target for gout. Despite such clinical significance, the structural basis of urate recognition and transport by GLUT9 remains elusive. Here, we present the cryoelectron microscopy (cryo-EM) structures of GLUT9 in the inward-open conformation in both apo and urate-bound states. Urate binds in a cleft between the N-terminal and C-terminal domains, interacting via hydrogen bonds and hydrophobic interactions. Structural comparison with sugar-transporting GLUTs highlights unique amino acid compositions in the substrate recognition pocket of GLUT9. Functional and mutational studies directly measuring GLUT9-mediated urate uptake further demonstrate the cooperative roles of multiple residues in urate recognition. Our findings elucidate the structural basis of urate transport by GLUT9 and provide valuable insights for the development of uricosuric drugs targeting GLUT9.


  • Organizational Affiliation
    • Graduate School of Medical Life Science, Yokohama City University, Yokohama 230-0045, Japan.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Solute carrier family 2, facilitated glucose transporter member 9548Homo sapiensMutation(s): 0 
Gene Names: SLC2A9GLUT9
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NRM0 (Homo sapiens)
Explore Q9NRM0 
Go to UniProtKB:  Q9NRM0
PHAROS:  Q9NRM0
GTEx:  ENSG00000109667 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NRM0
Glycosylation
Glycosylation Sites: 1Go to GlyGen: Q9NRM0-1
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
B
2N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan24K18064
Japan Society for the Promotion of Science (JSPS)Japan23K27132
Japan Society for the Promotion of Science (JSPS)Japan24H02264
Japan Science and TechnologyJapanJPMJPR21EF
Japan Society for the Promotion of Science (JSPS)Japan21K15031
Japan Society for the Promotion of Science (JSPS)Japan20H03216

Revision History  (Full details and data files)

  • Version 1.0: 2025-04-16
    Type: Initial release