2H1S | pdb_00002h1s

Crystal Structure of a Glyoxylate/Hydroxypyruvate reductase from Homo sapiens

• PDB DOI: https://doi.org/10.2210/pdb2H1S/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2006-05-16 Released: 2006-06-27 
• Deposition Author(s): Bitto, E., Wesenberg, G.E., Phillips Jr., G.N., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free: 
  0.264 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.207 (Depositor), 0.210 (DCC) 

Starting Models: experimental

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 2Q50

Literature

Crystal Structure of a Glyoxylate/Hydroxypyruvate reductase from Homo sapiens

Bitto, E., Wesenberg, G.E., Phillips Jr., G.N., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 143.61 kDa 
• Atom Count: 10,218 
• Modeled Residue Count: 1,284 
• Deposited Residue Count: 1,312 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyoxylate reductase/hydroxypyruvate reductase	A, B, C, D	328	Homo sapiens	Mutation(s): 5  Gene Names: GRHPR, GLXR EC: 1.1.1.79 (PDB Primary Data), 1.1.1.81 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBQ7 (Homo sapiens) Explore Q9UBQ7  Go to UniProtKB:  Q9UBQ7
PHAROS:  Q9UBQ7 GTEx:  ENSG00000137106

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C, D	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free:  0.264 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.207 (Depositor), 0.210 (DCC) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.996	α = 90
b = 66.436	β = 98.59
c = 148.774	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-06-27 
Deposition Author(s): Bitto, E., Wesenberg, G.E., Phillips Jr., G.N., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

Revision History  

• Version 1.0: 2006-06-27
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.3: 2017-10-18
  Changes: Refinement description
• Version 1.4: 2023-08-30
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.5: 2023-11-15
  Changes: Data collection
• Version 1.6: 2024-10-16
  Changes: Structure summary