1WZ8 | pdb_00001wz8

Crystal Structure of Probable Enoyl-CoA Dehydratase from Thermus Thermophilus HB8

• PDB DOI: https://doi.org/10.2210/pdb1WZ8/pdb

• Classification: LYASE
• Organism(s): Thermus thermophilus HB8
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2005-03-02 Released: 2005-03-15 
• Deposition Author(s): Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.258 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.220 (DCC) 

Starting Model: experimental

Literature

Crystal Structure of Probable Enoyl-CoA Dehydratase from Thermus Thermophilus HB8

Bagautdinov, B., Kunishima, N.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 173.96 kDa 
• Atom Count: 13,792 
• Modeled Residue Count: 1,578 
• Deposited Residue Count: 1,584 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
enoyl-CoA hydratase	A, B, C, D, E, F	264	Thermus thermophilus HB8	Mutation(s): 0  EC: 4.2.1.17
UniProt
Find proteins for Q5SLS5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SLS5  Go to UniProtKB:  Q5SLS5

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MPD	G [auth A], H [auth B], I [auth B], J [auth C], K [auth D], L [auth E], M [auth E], N [auth F]	(4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.258 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.220 (DCC) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.485	α = 90
b = 127.065	β = 90
c = 146.393	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
CNS	refinement
HKL-2000	data reduction
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-03-15 
Deposition Author(s): Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-03-15
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Derived calculations, Refinement description