Download MendeleyX-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160
Center for Eukaryotic Structural GenomicsTo be published.
1VM0 | pdb_00001vm0
X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160
- PDB DOI: https://doi.org/10.2210/pdb1VM0/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-08-24 Released: 2004-08-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.221 (Depositor), 0.232 (DCC)
- R-Value Work: 0.174 (Depositor), 0.189 (DCC)
- R-Value Observed: 0.177 (Depositor)
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Re-refinement Note
A newer entry is available that reflects an alternative modeling of the original data: 2Q3V
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| unknown protein | 130 | Arabidopsis thaliana | Mutation(s): 7 Gene Names: At2g34160 |  | |
UniProt | |||||
Find proteins for O22969 (Arabidopsis thaliana) Explore O22969 Go to UniProtKB: O22969 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O22969 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NO3 Query on NO3 | D [auth A], F [auth B], G [auth B], H [auth B] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | ||
| K Query on K | C [auth A], E [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.221 (Depositor), 0.232 (DCC)
- R-Value Work: 0.174 (Depositor), 0.189 (DCC)
- R-Value Observed: 0.177 (Depositor)
Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.785 | α = 90 |
| b = 79.079 | β = 90 |
| c = 43.73 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| RESOLVE | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2004-08-31 Deposition Author(s): Wesenberg, G.E., Smith, D.W., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Allard, S.T.M., Center for Eukaryotic Structural Genomics (CESG)
Revision History (Full details and data files)
- Version 1.0: 2004-08-31
Type: Initial release - Version 1.1: 2008-02-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 1.4: 2021-10-20
Changes: Advisory, Database references, Derived calculations - Version 1.5: 2023-12-27
Changes: Data collection - Version 1.6: 2024-11-20
Changes: Structure summary
