XYS: alpha-D-xylopyranose
XYS is a Ligand Of Interest in 5NHD designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5NHD_XYS_D_504 | 42% | 39% | 0.177 | 0.899 | 0.91 | 1.35 | - | 2 | 0 | 0 | 100% | 1 |
| 5NHD_XYS_C_504 | 20% | 46% | 0.253 | 0.864 | 1.02 | 0.96 | - | 1 | 0 | 0 | 100% | 1 |
| 5NHD_XYS_D_505 | 15% | 51% | 0.299 | 0.873 | 0.87 | 0.89 | - | - | 0 | 0 | 100% | 1 |
| 5NHD_XYS_A_505 | 12% | 36% | 0.267 | 0.807 | 1.13 | 1.3 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5NHD_XYS_B_507 | 8% | 52% | 0.315 | 0.81 | 0.43 | 1.26 | - | 2 | 0 | 0 | 100% | 1 |
| 6T8E_XYS_C_505 | 76% | 29% | 0.08 | 0.919 | 1.14 | 1.58 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5NHE_XYS_D_504 | 51% | 45% | 0.159 | 0.915 | 0.95 | 1.08 | - | 1 | 1 | 0 | 100% | 1 |
| 5NH7_XYS_C_505 | 48% | 46% | 0.167 | 0.913 | 0.84 | 1.13 | - | 2 | 1 | 0 | 100% | 1 |
| 5A03_XYS_B_1342 | 90% | 31% | 0.063 | 0.953 | 1.68 | 1.01 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8OZ1_XYS_A_804 | 89% | 58% | 0.064 | 0.967 | 0.83 | 0.66 | - | - | 0 | 0 | 90% | 1 |
| 8BQA_XYS_AAA_402 | 87% | 31% | 0.058 | 0.951 | 0.83 | 1.77 | - | 3 | 0 | 0 | 90% | 1 |
| 7PLC_XYS_C_302 | 83% | 59% | 0.096 | 0.961 | 0.55 | 0.87 | - | 1 | 1 | 0 | 100% | 1 |
| 2CDC_XYS_D_1371 | 80% | 46% | 0.1 | 0.954 | 1.01 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
