XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 5NH7 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5NH7_XYP_A_504 | 45% | 53% | 0.174 | 0.905 | 0.68 | 1.14 | - | 1 | 0 | 0 | 100% | 1 |
| 5NH7_XYP_C_504 | 20% | 52% | 0.252 | 0.857 | 0.5 | 1.35 | - | 2 | 0 | 0 | 100% | 1 |
| 5NH7_XYP_B_504 | 15% | 49% | 0.267 | 0.825 | 0.48 | 1.47 | - | 4 | 0 | 0 | 100% | 1 |
| 5NH7_XYP_D_507 | 13% | 51% | 0.253 | 0.792 | 0.54 | 1.34 | - | 2 | 0 | 0 | 100% | 1 |
| 5NH7_XYP_D_504 | 12% | 47% | 0.23 | 0.758 | 0.62 | 1.41 | - | 2 | 0 | 0 | 100% | 1 |
| 5NH7_XYP_C_506 | 11% | 60% | 0.275 | 0.79 | 0.47 | 1.06 | - | 1 | 0 | 0 | 100% | 1 |
| 5NH9_XYP_A_504 | 41% | 54% | 0.161 | 0.877 | 0.68 | 1.07 | - | - | 0 | 0 | 100% | 1 |
| 5NHD_XYP_A_504 | 27% | 54% | 0.216 | 0.861 | 0.58 | 1.18 | - | 1 | 0 | 0 | 100% | 1 |
| 8Y00_XYP_D_201 | 99% | 28% | 0.032 | 0.986 | 0.63 | 2.19 | - | 7 | 1 | 0 | 90% | 1 |
| 2WYS_XYP_A_1001 | 99% | 38% | 0.052 | 0.983 | 0.69 | 1.7 | - | 4 | 3 | 0 | 100% | 1 |
| 1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 1 |
| 1FHD_XYP_A_601 | 96% | 72% | 0.042 | 0.97 | 0.68 | 0.41 | - | - | 0 | 0 | 90% | 1 |
| 3C6Q_XYP_C_500 | 92% | 30% | 0.082 | 0.972 | 1.82 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
