GDE: 3,4,5-trihydroxybenzoic acid
GDE is a Ligand Of Interest in 3WPM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3WPM_GDE_B_502 | 74% | 37% | 0.125 | 0.955 | 1.43 | 1.05 | 1 | 1 | 2 | 0 | 100% | 1 |
| 3WR9_GDE_B_503 | 80% | 57% | 0.106 | 0.956 | 1.05 | 0.62 | - | - | 0 | 0 | 100% | 1 |
| 3WR4_GDE_B_502 | 72% | 37% | 0.129 | 0.954 | 1.03 | 1.41 | 1 | 2 | 2 | 0 | 100% | 1 |
| 3WKU_GDE_A_502 | 72% | 54% | 0.147 | 0.971 | 0.92 | 0.86 | 1 | - | 2 | 0 | 100% | 1 |
| 3WR3_GDE_A_502 | 50% | 53% | 0.16 | 0.911 | 1 | 0.84 | 1 | - | 1 | 0 | 100% | 1 |
| 3WRB_GDE_A_502 | 43% | 33% | 0.169 | 0.893 | 0.91 | 1.74 | 1 | 4 | 0 | 0 | 100% | 1 |
| 9JFC_GDE_M_301 | 100% | 30% | 0.023 | 0.995 | 1.21 | 1.55 | 1 | 4 | 6 | 0 | 100% | 1 |
| 7K4O_GDE_A_603 | 100% | 18% | 0.038 | 0.983 | 1.66 | 1.88 | 5 | 6 | 2 | 0 | 100% | 0.971 |
| 4J0H_GDE_B_501 | 92% | 62% | 0.074 | 0.966 | 0.72 | 0.72 | - | - | 2 | 0 | 100% | 1 |
