9FDA | pdb_00009fda

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.138
r_long_range_B_refined10.576
r_long_range_B_other10.373
r_dihedral_angle_1_deg6.98
r_mcangle_it5.911
r_mcangle_other5.911
r_scangle_other5.728
r_dihedral_angle_2_deg4.486
r_mcbond_it3.515
r_mcbond_other3.515
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.138
r_long_range_B_refined10.576
r_long_range_B_other10.373
r_dihedral_angle_1_deg6.98
r_mcangle_it5.911
r_mcangle_other5.911
r_scangle_other5.728
r_dihedral_angle_2_deg4.486
r_mcbond_it3.515
r_mcbond_other3.515
r_scbond_it3.431
r_scbond_other3.431
r_angle_refined_deg0.985
r_angle_other_deg0.379
r_chiral_restr0.041
r_gen_planes_refined0.008
r_bond_refined_d0.005
r_gen_planes_other0.002
r_bond_other_d
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE-PROPANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles642300
Reported Resolution (Å)2
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)1.14
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)300
Maximum Defocus (nm)1100
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8.0419
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION