Experiment: 7TSR

X-RAY DIFFRACTION

Serial Crystallography (SX)

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5OQ9	5OQ9,5OQA
experimental model	PDB	5OQA	5OQ9,5OQA

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	8.4	293	0.2 M LITHIUM SULFATE 0.1 M TRIS-Cl pH 8.4 25% PEG 3350, 15 mg/ml PROTEIN CONCENTRATION

Crystal Properties
Matthews coefficient	Solvent content
2.27	45.87

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 39.6	α = 90
b = 74.5	β = 90
c = 78.98	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	298	PIXEL	DECTRIS PILATUS3 6M		2020-03-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I24	0.9801	Diamond	I24

Serial Crystallography

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		fixed target

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.75	78.91	100	0.9	3.566	439.66		10662201

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.75	1.813			0.29	0.79

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5OQ9,5OQA	1.75	39.521	24265	1195	99.963	0.216	0.2139	0.21	0.2472	0.25	22.287

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.278			0.03		-0.308

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.509
r_dihedral_angle_4_deg	18.22
r_dihedral_angle_3_deg	14.154
r_dihedral_angle_1_deg	7.119
r_lrange_it	5.753
r_scangle_it	4.121
r_scbond_it	2.674
r_mcangle_it	2.672
r_mcbond_it	1.69
r_angle_refined_deg	1.532

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.509
r_dihedral_angle_4_deg	18.22
r_dihedral_angle_3_deg	14.154
r_dihedral_angle_1_deg	7.119
r_lrange_it	5.753
r_scangle_it	4.121
r_scbond_it	2.674
r_mcangle_it	2.672
r_mcbond_it	1.69
r_angle_refined_deg	1.532
r_nbtor_refined	0.307
r_symmetry_xyhbond_nbd_refined	0.279
r_nbd_refined	0.198
r_xyhbond_nbd_refined	0.143
r_symmetry_nbd_refined	0.126
r_chiral_restr	0.106
r_gen_planes_refined	0.008
r_bond_refined_d	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1748
Nucleic Acid Atoms
Solvent Atoms	96
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
CrystFEL	data reduction
CrystFEL	data scaling
REFMAC	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.