rsKiiro pump probe structure by TR-SFX
Serial Crystallography (SX)
Crystallization
Crystalization Experiments |
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ID | Method | pH | Temperature | Details |
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1 | BATCH MODE | | 293 | 0.2 M LITHIUM SULFATE 0.1 M TRIS-CL PH 8.5 23-30% PEG 3350 |
Crystal Properties |
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Matthews coefficient | Solvent content |
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2.28 | 45.94 |
Crystal Data
Unit Cell |
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Length ( Å ) | Angle ( ˚ ) |
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a = 39.34 | α = 90 |
b = 74.01 | β = 90 |
c = 78.62 | γ = 90 |
Symmetry |
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Space Group | P 21 21 21 |
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Diffraction
Diffraction Experiment |
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
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1 | 1 | x-ray | 293 | PIXEL | CS-PAD CXI-1 | | 2018-02-02 | M | SINGLE WAVELENGTH |
Radiation Source |
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
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1 | FREE ELECTRON LASER | SLAC LCLS BEAMLINE CXI | 1.305 | SLAC LCLS | CXI |
Serial Crystallography
Sample delivery method |
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Diffraction ID | Description | Sample Delivery Method |
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1 | | injection |
Data Collection
Overall |
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | CC (Half) | R Split (All) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
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1 | 1.31 | 19 | 100 | 0.99 | 0.1219 | 4.566 | 157 | | 51252 | | | 19.87 |
Highest Resolution Shell |
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | CC (Half) | R Split (All) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
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1 | 1.31 | 1.34 | | | 0.05 | 3.5 | | | |
Refinement
Statistics |
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work (Depositor) | R-Free (Depositor) | R-Free Selection Details | Mean Isotropic B |
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X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | 5OQE | 1.5 | 11.99 | 35571 | 1863 | 99.74 | 0.34352 | 0.34243 | 0.36425 | RANDOM | 15.8 |
Temperature Factor Modeling |
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
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-0.2 | | | 0.3 | | -0.1 |
RMS Deviations |
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Key | Refinement Restraint Deviation |
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r_dihedral_angle_2_deg | 29.688 |
r_dihedral_angle_4_deg | 23.142 |
r_dihedral_angle_3_deg | 16.638 |
r_dihedral_angle_1_deg | 7.497 |
r_long_range_B_refined | 6.166 |
r_long_range_B_other | 5.84 |
r_scangle_other | 2.418 |
r_angle_refined_deg | 1.733 |
r_mcangle_other | 1.692 |
r_mcangle_it | 1.688 |
RMS Deviations |
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Key | Refinement Restraint Deviation |
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r_dihedral_angle_2_deg | 29.688 |
r_dihedral_angle_4_deg | 23.142 |
r_dihedral_angle_3_deg | 16.638 |
r_dihedral_angle_1_deg | 7.497 |
r_long_range_B_refined | 6.166 |
r_long_range_B_other | 5.84 |
r_scangle_other | 2.418 |
r_angle_refined_deg | 1.733 |
r_mcangle_other | 1.692 |
r_mcangle_it | 1.688 |
r_scbond_it | 1.561 |
r_scbond_other | 1.557 |
r_angle_other_deg | 1.297 |
r_mcbond_it | 1.144 |
r_mcbond_other | 1.143 |
r_chiral_restr | 0.081 |
r_bond_refined_d | 0.011 |
r_gen_planes_refined | 0.009 |
r_gen_planes_other | 0.005 |
r_bond_other_d | 0.001 |
r_nbd_refined | |
r_nbd_other | |
r_nbtor_refined | |
r_nbtor_other | |
r_xyhbond_nbd_refined | |
r_xyhbond_nbd_other | |
r_metal_ion_refined | |
r_metal_ion_other | |
r_symmetry_vdw_refined | |
r_symmetry_vdw_other | |
r_symmetry_hbond_refined | |
r_symmetry_hbond_other | |
r_symmetry_metal_ion_refined | |
r_symmetry_metal_ion_other | |
r_scangle_it | |
r_rigid_bond_restr | |
r_sphericity_free | |
r_sphericity_bonded | |
Non-Hydrogen Atoms Used in Refinement |
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Non-Hydrogen Atoms | Number |
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Protein Atoms | 1723 |
Nucleic Acid Atoms | |
Solvent Atoms | 161 |
Heterogen Atoms | 20 |
Software
Software |
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Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
CrystFEL | data reduction |
CrystFEL | data scaling |
MOLREP | phasing |