7NRR | pdb_00007nrr

The structure of the SBP TarP_Csal in complex with caffeate

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6	290	0.2 M MgCl2, 0.1 M MES pH 6.0 and 20% (w/v) PEG 6000

Crystal Properties
Matthews coefficient	Solvent content
2.01	38.72

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 81.73	α = 90
b = 119.54	β = 90
c = 61.94	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2014-10-02	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.97258, 0.97841, 0.97625	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.67	67.47	98.6	0.079	0.029	18.4	10.7		70139

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.67	1.71	88.8		0.568	0.346	2	4.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MAD	FREE R-VALUE	1.67	67.468	70082	3439	98.511	0.209	0.2056	0.2167	0.2652	0.2704	23.702

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.156			-2.504		-1.653

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.008
r_scbond_it	26.722
r_scbond_other	26.717
r_scangle_it	20.858
r_scangle_other	20.856
r_lrange_other	18.889
r_lrange_it	18.856
r_dihedral_angle_4_deg	17.619
r_dihedral_angle_3_deg	13.517
r_mcangle_other	7.88
r_mcangle_it	7.877
r_mcbond_it	7.762
r_mcbond_other	7.726
r_dihedral_angle_1_deg	6.46
r_angle_refined_deg	1.499
r_angle_other_deg	1.332
r_symmetry_nbd_refined	0.272
r_nbd_refined	0.194
r_nbd_other	0.188
r_symmetry_nbd_other	0.185
r_nbtor_refined	0.163
r_xyhbond_nbd_refined	0.148
r_metal_ion_refined	0.142
r_symmetry_xyhbond_nbd_refined	0.133
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.071
r_bond_refined_d	0.007
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5102
Nucleic Acid Atoms
Solvent Atoms	245
Heterogen Atoms	29

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
SHELXCD	phasing
SHELXE	model building