6T42 | pdb_00006t42

Bovine lactoglobulin complex with decanol

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1BSY

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	1.34 M sodium citrate in 0.1 M Tris-HCl pH 7.5, decanol

Crystal Properties
Matthews coefficient	Solvent content
2.48	50.44

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 53.145	α = 90
b = 53.145	β = 90
c = 111.41	γ = 120

Symmetry
Space Group	P 32 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	AGILENT ATLAS CCD		2010-12-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SEALED TUBE	Agilent SuperNova	1.54

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	13.29	99.2	0.032	0.999	10.6	2.5		13734

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.95	2			0.33	0.871	1.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1BSY	1.95	13.286	13638	1357	98.334	0.179	0.17921	0.1738	0.18	0.2285	0.23	RANDOM	32.474

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.025	0.013		0.025		-0.081

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.862
r_dihedral_angle_3_deg	14.801
r_lrange_it	12.14
r_lrange_other	12.135
r_scangle_it	11.674
r_scangle_other	11.668
r_scbond_it	9.938
r_scbond_other	9.93
r_dihedral_angle_4_deg	9.306
r_dihedral_angle_1_deg	7.432
r_mcangle_it	7.267
r_mcangle_other	7.262
r_mcbond_other	6.288
r_mcbond_it	6.284
r_angle_refined_deg	1.582
r_angle_other_deg	1.292
r_nbd_refined	0.192
r_nbd_other	0.188
r_symmetry_nbd_other	0.186
r_xyhbond_nbd_refined	0.176
r_nbtor_refined	0.154
r_symmetry_xyhbond_nbd_refined	0.146
r_symmetry_nbd_refined	0.101
r_symmetry_nbtor_other	0.083
r_chiral_restr	0.078
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1178
Nucleic Acid Atoms
Solvent Atoms	89
Heterogen Atoms	11

Software

Software
Software Name	Purpose
REFMAC	refinement
CrysalisPro	data reduction
Aimless	data scaling
PHASER	phasing