1VM0 | pdb_00001vm0

X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT2G34160

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	Batch	7	293	protein 10 mg/ml, 18% PEG2K, potassium nitrate 0.200 M, MOPS 0.100 M, pH 7.0, Batch, temperature 293 K

Crystal Properties
Matthews coefficient	Solvent content
	29.24

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 59.785	α = 90
b = 79.079	β = 90
c = 43.73	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MAR CCD 165 mm	RH MIRROR	2004-04-03	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 32-ID	0.97908,0.97931,0.97623	APS	32-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	30	99.4	0.068	14	4.5		37012

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.86	95.7		0.329	3.7	3.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION		THROUGHOUT	1.8	29.361	18785	1030	99.61	0.177	0.17675	0.1744	0.189	0.2206	0.2323	RANDOM	17.63

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.158			-0.165		-0.993

RMS Deviations
Key	Refinement Restraint Deviation
r_scangle_it	8.468
r_dihedral_angle_1_deg	5.378
r_scbond_it	5.327
r_scangle_other	3.776
r_mcangle_it	3.013
r_angle_refined_deg	2.001
r_mcbond_it	1.59
r_mcangle_other	1.349
r_scbond_other	1.287
r_angle_other_deg	1.019
r_mcbond_other	0.347
r_symmetry_vdw_refined	0.345
r_symmetry_vdw_other	0.304
r_symmetry_hbond_refined	0.291
r_nbd_refined	0.264
r_nbd_other	0.247
r_xyhbond_nbd_refined	0.212
r_nbtor_refined	0.177
Metal-ion; symmetry: refined atoms	0.172
Metal-ion: refined atoms	0.132
r_chiral_restr	0.11
r_nbtor_other	0.087
r_bond_refined_d	0.023
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1554
Nucleic Acid Atoms
Solvent Atoms	161
Heterogen Atoms	18

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction