1N92 | pdb_00001n92

Horse Liver Alcohol Dehydrogenase Complexed with NAD+ and 4-Iodopyrazole

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1HLD	PDB ENTRY 1HLD

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	Dialysis	7	277	MPD, pH 7.0, Dialysis, temperature 277K

Crystal Properties
Matthews coefficient	Solvent content
2.17	42.89

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 44.2	α = 78.96
b = 51.05	β = 75.47
c = 93.23	γ = 70.24

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	RIGAKU RAXIS IV	confocal osmic	2001-03-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU	1.5418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.47	20	88.8	0.054	0.054	5.9	2.1	156075	109109

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.47	1.508	69		0.127	0.127	4.1		5097

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1HLD	1.47	20	156075	109109	2234	88.8	0.1515	0.151	0.151	0.15	0.1831	0.19	RANDOM	17.152

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.25	-0.02	0.78	-0.21	0.04	0.06

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	9.496
r_sphericity_bonded	7.943
r_dihedral_angle_1_deg	6.051
r_scangle_it	5.258
r_angle_other_deg	3.608
r_scbond_it	3.604
r_mcangle_it	2.276
r_angle_refined_deg	1.634
r_mcbond_it	1.513
r_rigid_bond_restr	1.376
r_symmetry_vdw_other	0.308
r_nbd_other	0.288
r_nbd_refined	0.233
r_symmetry_vdw_refined	0.217
r_symmetry_hbond_refined	0.112
r_chiral_restr	0.106
r_nbtor_other	0.106
r_xyhbond_nbd_refined	0.094
r_bond_refined_d	0.016
r_gen_planes_other	0.008
r_gen_planes_refined	0.006
r_bond_other_d

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5570
Nucleic Acid Atoms
Solvent Atoms	589
Heterogen Atoms	104

Software

Software
Software Name	Purpose
d*TREK	data scaling
d*TREK	data reduction
AMoRE	phasing
REFMAC	refinement