1FGN | pdb_00001fgn

MONOCLONAL MURINE ANTIBODY 5G9-ANTI-HUMAN TISSUE FACTOR

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1MCP	FABS: HYHEL5-5 AND MCPC603
experimental model	PDB	3HFM	FABS: HYHEL5-5 AND MCPC603

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		7		TWO SLIGHTLY DIFFERENT CRYSTAL FORMS OF FAB 5G9 WERE OBTAINED USING 17.5% PEG 10K AT PH 8.5 AND 1.35M SODIUM CITRATE AT PH 5.5 AS PRECIPITANTS. THE TWO CRYSTAL FORMS ARE BOTH ORTHORHOMBIC, P212121, WITH TYPICAL SIZES OF 0.5 X 0.4 X 0.3 MM3 (CITRATE FORM) AND 0.6 X 0.35 X 0.2 MM3 (PEG FORM), WITH SLIGHTLY DIFFERENT CELL PARAMETERS OF A=89.1A, B=90.5A, C=59.3A (CITRATE) AND A=91.6A, B=93.7A, C=60.7A (PEG). PEG FORM IS USED FOR STRUCTURE DETERMINATION., pH 7.0

Crystal Properties
Matthews coefficient	Solvent content
2.4	46

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 91.6	α = 90
b = 93.7	β = 90
c = 60.7	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	297	AREA DETECTOR	SIEMENS	COLLIMATOR	1992-03-21	M

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	ELLIOTT GX-18

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.38	37	90	0.075	20	4.5		19394			30

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.39	2.54	58.5		0.183	4	1.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Free (Depositor)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	A POSTERIORI	FABS: HYHEL5-5 AND MCPC603	2.5	8	16666	1643	92.4	0.217	0.217	0.304	RANDOM	10.2

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
x_dihedral_angle_d	28.5
x_scangle_it	10.32
x_mcangle_it	6.91
x_scbond_it	6.83
x_mcbond_it	4.28
x_angle_deg	2
x_improper_angle_d	1.67
x_bond_d	0.015
x_bond_d_na
x_bond_d_prot
x_angle_d
x_angle_d_na
x_angle_d_prot
x_angle_deg_na
x_angle_deg_prot
x_dihedral_angle_d_na
x_dihedral_angle_d_prot
x_improper_angle_d_na
x_improper_angle_d_prot

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3305
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software Name	Purpose
XENGEN	data collection
XENGEN	data reduction
X-PLOR	model building
X-PLOR	refinement
XENGEN	data scaling
X-PLOR	phasing