9ZVX | pdb_00009zvx

Structural insights into the exosite-mediated activation of Factor IX by Factor XIa using cryoEM


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00089Trypsin (Trypsin)TrypsinDomain
PF00008EGF-like domain (EGF)EGF-like domainThere is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ...There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.
Domain
PF14670Coagulation Factor Xa inhibitory site (FXa_inhibition)Coagulation Factor Xa inhibitory siteThis short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442 [1]. Domain
PF00594Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain (Gla)Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domainThis domain is responsible for the high-affinity binding of calcium ions. This domain contains post-translational modifications of many glutamate residues by Vitamin K-dependent carboxylation to form gamma-carboxyglutamate (Gla). Domain
PF00089Trypsin (Trypsin)TrypsinDomain
PF00024PAN domain (PAN_1)PAN domainThe PAN domain [1] contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge the links the N and C termini of the domain. The domain is found in diverse proteins, in some the ...The PAN domain [1] contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge the links the N and C termini of the domain. The domain is found in diverse proteins, in some they mediate protein-protein interactions, in others they mediate protein-carbohydrate interactions.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Coagulation factor IXa heavy chain
Coagulation factor IXa light chain
Coagulation factor XIa light chain
Coagulation factor XIa heavy chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
IPR018097EGF-like calcium-binding, conserved siteConserved Site
IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
IPR000742EGF-like domainDomain
IPR050442Peptidase S1 family, coagulation factorsFamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR017857Coagulation factor-like, Gla domain superfamilyHomologous Superfamily
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR001254Serine proteases, trypsin domainDomain
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
IPR001881EGF-like calcium-binding domainDomain
IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM
IPR012224Peptidase S1A, coagulation factor VII/IX/X/C/ZFamily
IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
IPR018097EGF-like calcium-binding, conserved siteConserved Site
IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
IPR000742EGF-like domainDomain
IPR050442Peptidase S1 family, coagulation factorsFamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR017857Coagulation factor-like, Gla domain superfamilyHomologous Superfamily
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR001254Serine proteases, trypsin domainDomain
IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
IPR001881EGF-like calcium-binding domainDomain
IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM
IPR012224Peptidase S1A, coagulation factor VII/IX/X/C/ZFamily
IPR000177Apple domainDomain
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR001254Serine proteases, trypsin domainDomain
IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
IPR003609PAN/Apple domainDomain
IPR000177Apple domainDomain
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR001314Peptidase S1A, chymotrypsin familyFamily
IPR033116Serine proteases, trypsin family, serine active siteActive Site
IPR001254Serine proteases, trypsin domainDomain
IPR018114Serine protease-like, trypsin family, histidine active siteActive Site
IPR003609PAN/Apple domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
CGU Parent Component: GLU

AA0032

:  L-gamma-carboxyglutamic acid MOD:00041