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 9P7M | pdb_00009p7m

LPS transport bridge LptBFGCADE from Escherichia coli

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth E]SCOP2B SuperfamilyTolB N-terminal domain-like 8053477 3000482 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyLptD-like barrel 8053496 3002195 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyOstA-like beta-folder 8053503 3002196 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyOstA-like beta-folder 8053499 3002196 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth G]PF03739Lipopolysaccharide export system permease LptF/LptG (LptF_LptG)Lipopolysaccharide export system permease LptF/LptG- Family
E [auth F]PF03739Lipopolysaccharide export system permease LptF/LptG (LptF_LptG)Lipopolysaccharide export system permease LptF/LptG- Family
D [auth E]PF04390Lipopolysaccharide-assembly (LptE)Lipopolysaccharide-assembly- Family
C [auth D]PF03968LptA/(LptD N-terminal domain) LPS transport protein (LptD_N)LptA/(LptD N-terminal domain) LPS transport proteinThis family of proteins are involved in lipopolysaccharide transport across the gram negative inner and outer membranes. The type examples for this family are E. coli LptA Swiss:P0ADV1 and the N-terminal domain of LptD Swiss:P31554. Domain
C [auth D]PF04453LPS transport system D (LptD)LPS transport system D- Family
B [auth C]PF03968LptA/(LptD N-terminal domain) LPS transport protein (LptD_N)LptA/(LptD N-terminal domain) LPS transport proteinThis family of proteins are involved in lipopolysaccharide transport across the gram negative inner and outer membranes. The type examples for this family are E. coli LptA Swiss:P0ADV1 and the N-terminal domain of LptD Swiss:P31554. Domain
B [auth C]PF06835Lipopolysaccharide-assembly, LptC-related (LptC)Lipopolysaccharide-assembly, LptC-related- Family
A [auth B],
G [auth H]		PF12399Branched-chain amino acid ATP-binding cassette transporter (BCA_ABC_TP_C)Branched-chain amino acid ATP-binding cassette transporterThis domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with Pfam:PF00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP de ...This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with Pfam:PF00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter [1]. This domain is essential for LPS transport, through critical interactions with Walker A and switch helix domains [2].
Domain
A [auth B],
G [auth H]		PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth G]Lipopolysaccharide export system permease protein LptG-
E [auth F]Lipopolysaccharide export system permease protein LptF-
D [auth E]LPS-assembly lipoprotein LptE
C [auth D]LPS-assembly protein LptD-
B [auth C]Lipopolysaccharide export system protein LptC,Lipopolysaccharide export system protein LptA
A [auth B],
G [auth H]		Lipopolysaccharide export system ATP-binding protein LptB

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth G]IPR030923LPS export ABC transporter permease LptGFamily
F [auth G]IPR005495Permease LptG/LptF-relatedFamily
E [auth F]IPR005495Permease LptG/LptF-relatedFamily
E [auth F]IPR030922LPS export ABC transporter permease LptFFamily
D [auth E]IPR007485LPS-assembly lipoprotein LptEFamily
C [auth D]IPR007543LptD, C-terminalDomain
C [auth D]IPR020889LPS-assembly protein LptDFamily
C [auth D]IPR050218Lipopolysaccharide Assembly Protein LptDFamily
C [auth D]IPR005653Organic solvent tolerance-like, N-terminalDomain
B [auth C]IPR014340Lipopolysaccharide export system protein LptAFamily
B [auth C]IPR052037Lipopolysaccharide export system LptA-likeFamily
B [auth C]IPR005653Organic solvent tolerance-like, N-terminalDomain
B [auth C]IPR010664Lipopolysaccharide assembly, LptC-relatedFamily
B [auth C]IPR026265Lipopolysaccharide export system protein LptCFamily
B [auth C]IPR052363Lipopolysaccharide export system LptCFamily
A [auth B],
G [auth H]		IPR017871ABC transporter-like, conserved siteConserved Site
A [auth B],
G [auth H]		IPR003439ABC transporter-like, ATP-binding domainDomain
A [auth B],
G [auth H]		IPR051120ABC Transporter, Amino Acid and LPS TransportFamily
A [auth B],
G [auth H]		IPR032823Branched-chain amino acid ATP-binding cassette transporter, C-terminalDomain
A [auth B],
G [auth H]		IPR003593AAA+ ATPase domainDomain
A [auth B],
G [auth H]		IPR030921LPS export ABC transporter, ATP-binding protein LptBFamily
A [auth B],
G [auth H]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily