9L7D | pdb_00009l7d

Type III-B CRISPR-Cas effector from Archaeoglobus fulgidus (Form 2)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth G]	SCOP2B Superfamily	AF1862-like	8035071	3001582	SCOP2B (2022-06-29)
E [auth I]	SCOP2B Superfamily	CRISPR-associated proteins	8052158	3001554	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	CRISPR-associated proteins	8052159	3001554	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	CRISPR-associated proteins	8052160	3001554	SCOP2B (2022-06-29)
A [auth F]	SCOP2B Superfamily	CRISPR-associated proteins	8052157	3001554	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	CRISPR-associated proteins	8052157	3001554	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth G]	PF09701	CRISPR-associated protein (Cas_Cmr5) (Cas_Cmr5)	CRISPR-associated protein (Cas_Cmr5)	-	Family
E [auth I]	PF03787	RAMP superfamily (RAMPs)	RAMP superfamily	-	Family
D [auth C]	PF09700	CRISPR-associated protein (Cas_Cmr3) (Cas_Cmr3)	CRISPR-associated protein (Cas_Cmr3)	-	Family
C [auth B]	PF22335	Cas10/Cmr2, second palm domain (Cas10-Cmr2_palm2)	Cas10/Cmr2, second palm domain	This entry represents the second palm domain of Cas10 subunit (named Csm1 in Type III-A and Cmr2 in III-B systems) from type III CRISPR-Cas systems [6]. This domain contains a conserved GGDD motif that is important for DNA polymerase activity [1-5]. ...	This entry represents the second palm domain of Cas10 subunit (named Csm1 in Type III-A and Cmr2 in III-B systems) from type III CRISPR-Cas systems [6]. This domain contains a conserved GGDD motif that is important for DNA polymerase activity [1-5].	Domain
C [auth B]	PF12469	CRISPR-associated protein Cmr2, N-terminal (Cmr2_N)	CRISPR-associated protein Cmr2, N-terminal	This domain family is typically between 101 and 138 amino acids in length and it is found in subunit Crm2 of the CRISPR RNA-Cas protein complex (Cmr complex) [1].	Domain
B [auth A]	PF22407	Cmr1, C-terminal domain (Cmr1_C)	Cmr1, C-terminal domain	This entry represents the C-terminal RRM domain of CRISPR system Cmr subunit Cmr1 from Archaeoglobus fulgidus [1].	Domain
B [auth A]	PF03787	RAMP superfamily (RAMPs)	RAMP superfamily	-	Family
A [auth F], G [auth E]	PF03787	RAMP superfamily (RAMPs)	RAMP superfamily	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H [auth V]	RNA (5'-R(UPGPUPAPGPUPAPUPGPCPGPGPUPCPCPUPUPGPCPGPGPC)-3')	-	-	-
F [auth G]	CRISPR system Cmr subunit Cmr5	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm
E [auth I]	Type III-B CRISPR module RAMP protein Cmr6	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
D [auth C]	Type III-B CRISPR module-associated protein Cmr3	-	-	-
C [auth B]	GGDEF domain-containing protein	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
B [auth A]	Cmr1 C-terminal domain-containing protein	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
A [auth F], G [auth E]	Type III-B CRISPR module RAMP protein Cmr4	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth G]	IPR010160	CRISPR-associated protein, Cmr5	Family
F [auth G]	IPR023101	AF1862-like domain superfamily	Homologous Superfamily
E [auth I]	IPR010172	CRISPR-associated protein, TM1791	Family
E [auth I]	IPR005537	CRISPR type III-associated protein	Domain
D [auth C]	IPR010165	Type III-B CRISPR module-associated protein Cmr3	Family
D [auth C]	IPR019117	CRISPR-associated protein, Cmr3	Family
C [auth B]	IPR024615	CRISPR-associated protein Cmr2, N-terminal	Domain
C [auth B]	IPR038242	CRISPR-Cas system, Cmr2 subunit, D1 domain, cysteine cluster	Homologous Superfamily
C [auth B]	IPR013407	CRISPR-associated protein Cmr2	Family
C [auth B]	IPR000160	GGDEF domain	Domain
C [auth B]	IPR052117	CRISPR-associated Cas10/Csm1 subtype III-A protein	Family
C [auth B]	IPR054767	Cas10/Cmr2, second palm domain	Domain
C [auth B]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
B [auth A]	IPR055061	Cmr1, C-terminal domain	Domain
B [auth A]	IPR007522	CRISPR-associated protein TM1795	Family
B [auth A]	IPR005537	CRISPR type III-associated protein	Domain
A [auth F], G [auth E]	IPR013410	CRISPR-associated RAMP Cmr4	Family
A [auth F], G [auth E]	IPR005537	CRISPR type III-associated protein	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.