9DD7 | pdb_00009dd7

Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E.DS

External Resource: Annotation


SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
G [auth M],
H [auth N],
I [auth O]		Light ChainIGKV1 Kappaglycoprotein bSAbDab (2025-11-07)
D [auth I],
E [auth J],
F [auth K]		Heavy ChainIGHV3 -glycoprotein bSAbDab (2025-11-07)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth E],
B [auth F],
C [auth G]		PF17417Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2)Herpesvirus Glycoprotein B PH-like domainThis domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. Domain
A [auth E],
B [auth F],
C [auth G]		PF17416Herpesvirus Glycoprotein B (Glycoprot_B_PH1)Herpesvirus Glycoprotein BThis domain has a PH-like fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth M],
H [auth N],
I [auth O]		D48 light chain---
D [auth I],
E [auth J],
F [auth K]		D48 heavy chain---
A [auth E],
B [auth F],
C [auth G]		Glycoprotein B-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth E],
B [auth F],
C [auth G]		IPR035381Herpesvirus Glycoprotein B, PH-like domain 2Domain
A [auth E],
B [auth F],
C [auth G]		IPR035377Herpesvirus Glycoprotein B, PH-like domain 1Domain
A [auth E],
B [auth F],
C [auth G]		IPR055341Herpesvirus glycoprotein B ectodomain C-terminalDomain
A [auth E],
B [auth F],
C [auth G]		IPR000234Herpesvirus Glycoprotein BFamily
A [auth E],
B [auth F],
C [auth G]		IPR038631Herpesvirus Glycoprotein B, PH-like domain 2 superfamilyHomologous Superfamily