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 9AB1 | pdb_00009ab1

Integrative structure of the human nuclear pore complex nuclear basket: 1-spoke structure


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
AB [auth G],
BB [auth G8]
Sphingomyelin phosphodiesterase 4
IC [auth c]PCI domain-containing protein 2
NC [auth h8],
QC [auth h]
Nuclear pore complex protein Nup42
AD [auth U16],
BD [auth U24],
CD [auth U8],
ZC [auth U]
Nuclear pore complex protein Nup98
AE [auth Q16],
BE [auth Q24],
CE [auth Q8],
ZD [auth Q]
Nuclear pore complex protein Nup43-
JA [auth C],
KA [auth C16],
LA [auth C24],
MA [auth C32],
NA [auth C8]
Nuclear pore complex protein Nup205
HA [auth B],
IA [auth B8]
Nuclear pore complex protein Nup188
Nuclear pore complex protein Nup93
Nuclear pore complex protein Nup50-
T [auth 7]Germinal-center associated nuclear protein
DE [auth T],
EE [auth T8]
Nuclear pore complex protein ELYS-
P [auth 4],
Q [auth 48]
ALADIN-
VD [auth P],
WD [auth P16],
XD [auth P24],
YD [auth P8]
Nuclear pore complex protein Nup85
RD [auth O],
SD [auth O16],
TD [auth O24],
UD [auth O8]
Nucleoporin Seh1
ND [auth N],
OD [auth N16],
PD [auth N24],
QD [auth N8]
Protein SEC13 homolog
Nuclear pore complex protein Nup62
FD [auth Z],
GD [auth Z8]
Nuclear envelope pore membrane protein POM 121
DD [auth V],
ED [auth V8]
Nuclear pore complex protein Nup214
VC [auth I],
WC [auth I16],
XC [auth I24],
YC [auth I8]
Nuclear pore complex protein Nup58
RC [auth H],
SC [auth H16],
TC [auth H24],
UC [auth H8]
Nuclear pore complex protein Nup54
N [auth 2],
O [auth 3],
R [auth 5],
S [auth 6]
Nuclear pore complex protein TPR
MC [auth g8],
PC [auth g]
Nuclear pore complex protein GLE1
LC [auth f8],
OC [auth f]
ATP-dependent RNA helicase DDX19B
KC [auth e]Spliceosome RNA helicase DDX39B
JC [auth d]26S proteasome complex subunit SEM1
EC [auth b],
FC [auth b16],
GC [auth b24],
HC [auth b8]
Transcription/export complex protein 2 homolog
DC [auth a]Centrin-2
AC [auth Y],
BC [auth Y16],
CC [auth Y8]
Nuclear pore complex protein Nup153
YB [auth X],
ZB [auth X8]
Transmembrane protein 209- -
Nuclear pore membrane glycoprotein 210-
WB [auth W],
XB [auth W8]
Nuclear pore complex protein Nup88
SB [auth S],
TB [auth S16],
UB [auth S24],
VB [auth S8]
Nuclear pore complex protein Nup37-
OB [auth R],
PB [auth R16],
QB [auth R24],
RB [auth R8]
Nuclear pore complex protein Nup160
KB [auth M],
LB [auth M16],
MB [auth M24],
NB [auth M8]
Nuclear pore complex protein Nup96 (NUP96 part of NUP98-NUP96 precursor, P52948)
GB [auth L],
HB [auth L16],
IB [auth L24],
JB [auth L8]
Nuclear pore complex protein Nup107
CB [auth K],
DB [auth K16],
EB [auth K24],
FB [auth K8]
Nuclear pore complex protein Nup133
WA [auth F],
XA [auth F24],
YA [auth F40],
ZA [auth F8]
Nuclear pore complex protein Nup35
UA [auth E],
VA [auth E8]
Nuclear envelope protein NDC1
Nuclear pore complex protein Nup155
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
E3 SUMO-protein ligase RanBP2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
AB [auth G],
BB [auth G8]
IPR024129Sphingomyelin phosphodiesterase 4Family
IC [auth c]IPR045114Csn12 familyFamily
IC [auth c]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IC [auth c]IPR000717Proteasome component (PCI) domainDomain
NC [auth h8],
QC [auth h]
IPR000571Zinc finger, CCCH-typeDomain
NC [auth h8],
QC [auth h]
IPR060306NUP42, C-terminal domainDomain
NC [auth h8],
QC [auth h]
IPR051767Nucleoporin NUP42 domain-containing proteinFamily
NC [auth h8],
QC [auth h]
IPR063609NUP42/Amo1, N-terminal domainDomain
AD [auth U16],
BD [auth U24],
CD [auth U8],
ZC [auth U]
IPR037665Nucleoporin peptidase S59-likeFamily
AD [auth U16],
BD [auth U24],
CD [auth U8],
ZC [auth U]
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
AD [auth U16],
BD [auth U24],
CD [auth U8],
ZC [auth U]
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
AD [auth U16],
BD [auth U24],
CD [auth U8],
ZC [auth U]
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
AE [auth Q16],
BE [auth Q24],
CE [auth Q8],
ZD [auth Q]
IPR001680WD40 repeatRepeat
AE [auth Q16],
BE [auth Q24],
CE [auth Q8],
ZD [auth Q]
IPR019775WD40 repeat, conserved siteConserved Site
AE [auth Q16],
BE [auth Q24],
CE [auth Q8],
ZD [auth Q]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AE [auth Q16],
BE [auth Q24],
CE [auth Q8],
ZD [auth Q]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth C],
KA [auth C16],
LA [auth C24],
MA [auth C32],
NA [auth C8]
IPR021827Nucleoporin Nup186/Nup192/Nup205Family
HA [auth B],
IA [auth B8]
IPR016024Armadillo-type foldHomologous Superfamily
HA [auth B],
IA [auth B8]
IPR044840Nucleoporin Nup188Family
HA [auth B],
IA [auth B8]
IPR048883Nucleoporin Nup188, N-terminal subdomain IIIDomain
HA [auth B],
IA [auth B8]
IPR018864Nucleoporin Nup188, N-terminalDomain
IPR007231Nucleoporin interacting component Nup93/Nic96Family
IPR015007Nuclear pore complex, NUP2/50/61Domain
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR000156Ran binding domainDomain
IPR045255Ran binding protein RanBP1-likeFamily
T [auth 7]IPR031907Germinal-centre associated nuclear protein, MCM3AP N-terminal domainDomain
T [auth 7]IPR034265MCM3AP, RNA recognition motifDomain
T [auth 7]IPR031908Germinal-centre associated nuclear protein, nucleoporin homology domainDomain
T [auth 7]IPR062097GANP, MCM3AP C-terminal domainDomain
T [auth 7]IPR045107SAC3/GANP/THP3Family
T [auth 7]IPR000717Proteasome component (PCI) domainDomain
T [auth 7]IPR031910Germinal-centre associated nuclear protein, CID domainDomain
T [auth 7]IPR035979RNA-binding domain superfamilyHomologous Superfamily
T [auth 7]IPR005062SAC3/GANP/THP3, conserved domainDomain
DE [auth T],
EE [auth T8]
IPR025151ELYS-like domainDomain
DE [auth T],
EE [auth T8]
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
DE [auth T],
EE [auth T8]
IPR032040ELYS, beta-propeller domainDomain
DE [auth T],
EE [auth T8]
IPR052620ELYS/MEL-28 Nuclear Assembly FactorFamily
P [auth 4],
Q [auth 48]
IPR057403Aladin, seven-bladed propellerDomain
P [auth 4],
Q [auth 48]
IPR019775WD40 repeat, conserved siteConserved Site
P [auth 4],
Q [auth 48]
IPR045139AladinFamily
P [auth 4],
Q [auth 48]
IPR001680WD40 repeatRepeat
P [auth 4],
Q [auth 48]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
VD [auth P],
WD [auth P16],
XD [auth P24],
YD [auth P8]
IPR011502Nucleoporin Nup85-likeFamily
RD [auth O],
SD [auth O16],
TD [auth O24],
UD [auth O8]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
RD [auth O],
SD [auth O16],
TD [auth O24],
UD [auth O8]
IPR037363Sec13/Seh1 familyFamily
RD [auth O],
SD [auth O16],
TD [auth O24],
UD [auth O8]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
RD [auth O],
SD [auth O16],
TD [auth O24],
UD [auth O8]
IPR001680WD40 repeatRepeat
RD [auth O],
SD [auth O16],
TD [auth O24],
UD [auth O8]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
ND [auth N],
OD [auth N16],
PD [auth N24],
QD [auth N8]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
ND [auth N],
OD [auth N16],
PD [auth N24],
QD [auth N8]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
ND [auth N],
OD [auth N16],
PD [auth N24],
QD [auth N8]
IPR037363Sec13/Seh1 familyFamily
ND [auth N],
OD [auth N16],
PD [auth N24],
QD [auth N8]
IPR001680WD40 repeatRepeat
IPR007758Nucleoporin, NSP1-like, C-terminalDomain
IPR026010Nucleoporin NSP1/NUP62Family
FD [auth Z],
GD [auth Z8]
IPR026054Nuclear pore complex proteinFamily
DD [auth V],
ED [auth V8]
IPR039462Nucleoporin Nup159/Nup146, N-terminalDomain
DD [auth V],
ED [auth V8]
IPR041553Nuclear pore complex protein Nup214, phenylalanine-glycine (FG) domainDomain
DD [auth V],
ED [auth V8]
IPR001680WD40 repeatRepeat
DD [auth V],
ED [auth V8]
IPR026054Nuclear pore complex proteinFamily
DD [auth V],
ED [auth V8]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
VC [auth I],
WC [auth I16],
XC [auth I24],
YC [auth I8]
IPR024882Nucleoporin p58/p45/NUP49Family
RC [auth H],
SC [auth H16],
TC [auth H24],
UC [auth H8]
IPR040985Nup54, C-terminal interacting domainDomain
RC [auth H],
SC [auth H16],
TC [auth H24],
UC [auth H8]
IPR024864Nucleoporin Nup54/Nup57/Nup44Family
RC [auth H],
SC [auth H16],
TC [auth H24],
UC [auth H8]
IPR063117Nup54, alpha/beta domainDomain
RC [auth H],
SC [auth H16],
TC [auth H24],
UC [auth H8]
IPR025712Nucleoporin Nup54, alpha-helical domainDomain
N [auth 2],
O [auth 3],
R [auth 5],
S [auth 6]
IPR012929Nucleoprotein, TPR/MLP1-2 domainDomain
N [auth 2],
O [auth 3],
R [auth 5],
S [auth 6]
IPR057577Nucleoprotein, TPR/MPL1 domainDomain
N [auth 2],
O [auth 3],
R [auth 5],
S [auth 6]
IPR057974NUA/TPR/MLP1-2-like domainDomain
MC [auth g8],
PC [auth g]
IPR012476mRNA export factor GLE1-likeFamily
MC [auth g8],
PC [auth g]
IPR038506GLE1-like superfamilyHomologous Superfamily
LC [auth f8],
OC [auth f]
IPR001650Helicase, C-terminal domain-likeDomain
LC [auth f8],
OC [auth f]
IPR014014RNA helicase, DEAD-box type, Q motifConserved Site
LC [auth f8],
OC [auth f]
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
LC [auth f8],
OC [auth f]
IPR011545DEAD/DEAH-box helicase domainDomain
LC [auth f8],
OC [auth f]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
KC [auth e]IPR014014RNA helicase, DEAD-box type, Q motifConserved Site
KC [auth e]IPR011545DEAD/DEAH-box helicase domainDomain
KC [auth e]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
KC [auth e]IPR001650Helicase, C-terminal domain-likeDomain
KC [auth e]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
JC [auth d]IPR007834DSS1/SEM1Family
EC [auth b],
FC [auth b16],
GC [auth b24],
HC [auth b8]
IPR018783Transcription factor, enhancer of yellow 2Family
EC [auth b],
FC [auth b16],
GC [auth b24],
HC [auth b8]
IPR038212Transcription factor EnY2 superfamilyHomologous Superfamily
DC [auth a]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
DC [auth a]IPR050145Centrin/CML-likeFamily
DC [auth a]IPR002048EF-hand domainDomain
DC [auth a]IPR011992EF-hand domain pairHomologous Superfamily
DC [auth a]IPR018247EF-Hand 1, calcium-binding siteBinding Site
AC [auth Y],
BC [auth Y16],
CC [auth Y8]
IPR013913Nucleoporin Nup153, N-terminalDomain
AC [auth Y],
BC [auth Y16],
CC [auth Y8]
IPR026054Nuclear pore complex proteinFamily
AC [auth Y],
BC [auth Y16],
CC [auth Y8]
IPR036443Zinc finger, RanBP2-type superfamilyHomologous Superfamily
AC [auth Y],
BC [auth Y16],
CC [auth Y8]
IPR018892Retro-transposon transporting motifConserved Site
AC [auth Y],
BC [auth Y16],
CC [auth Y8]
IPR001876Zinc finger, RanBP2-typeDomain
YB [auth X],
ZB [auth X8]
IPR019176Cytochrome B561-relatedFamily
IPR045197Nuclear pore membrane glycoprotein 210-likeFamily
IPR055094NUP210, Ig-like domain 15Domain
IPR056897NUP210, fourth Ig-like domainDomain
IPR055096NUP210, Ig-like domain 1Domain
IPR056898NUP210, Ig-like domain 6Domain
IPR057586NUP210, Ig-like domain 16Domain
IPR056899NUP210, Ig-like domain 9Domain
IPR055098NUP210, Ig-like domain 3Domain
IPR003343Bacterial Ig-like domain, group 2Domain
IPR058779NUP210, Ig-like domain 13Domain
IPR055097NUP210, Ig-like domain 2Domain
IPR055099NUP210, Ig-like domain 7Domain
IPR055095NUP210, C-terminal Ig-like domainDomain
IPR008964Invasin/intimin cell-adhesion fragmentsHomologous Superfamily
WB [auth W],
XB [auth W8]
IPR037700Nucleoporin NUP88/NUP82Family
SB [auth S],
TB [auth S16],
UB [auth S24],
VB [auth S8]
IPR037626Nucleoporin Nup37Family
SB [auth S],
TB [auth S16],
UB [auth S24],
VB [auth S8]
IPR001680WD40 repeatRepeat
SB [auth S],
TB [auth S16],
UB [auth S24],
VB [auth S8]
IPR019775WD40 repeat, conserved siteConserved Site
SB [auth S],
TB [auth S16],
UB [auth S24],
VB [auth S8]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
SB [auth S],
TB [auth S16],
UB [auth S24],
VB [auth S8]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OB [auth R],
PB [auth R16],
QB [auth R24],
RB [auth R8]
IPR021717Nucleoporin Nup120/160Family
OB [auth R],
PB [auth R16],
QB [auth R24],
RB [auth R8]
IPR056547NUP160, helical domainDomain
OB [auth R],
PB [auth R16],
QB [auth R24],
RB [auth R8]
IPR056535NUP160, middle TPR domainDomain
OB [auth R],
PB [auth R16],
QB [auth R24],
RB [auth R8]
IPR059141Nucleoporin Nup120/160, beta-propeller domainDomain
OB [auth R],
PB [auth R16],
QB [auth R24],
RB [auth R8]
IPR056536NUP160, C-terminal TPR domainDomain
KB [auth M],
LB [auth M16],
MB [auth M24],
NB [auth M8]
IPR037665Nucleoporin peptidase S59-likeFamily
KB [auth M],
LB [auth M16],
MB [auth M24],
NB [auth M8]
IPR036903Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamilyHomologous Superfamily
KB [auth M],
LB [auth M16],
MB [auth M24],
NB [auth M8]
IPR007230Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domainDomain
KB [auth M],
LB [auth M16],
MB [auth M24],
NB [auth M8]
IPR021967Nuclear pore complex protein NUP96, C-terminal domainDomain
GB [auth L],
HB [auth L16],
IB [auth L24],
JB [auth L8]
IPR007252Nuclear pore protein 84/107Family
CB [auth K],
DB [auth K16],
EB [auth K24],
FB [auth K8]
IPR037624Nuclear pore complex protein Nup133-likeFamily
CB [auth K],
DB [auth K16],
EB [auth K24],
FB [auth K8]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CB [auth K],
DB [auth K16],
EB [auth K24],
FB [auth K8]
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
WA [auth F],
XA [auth F24],
YA [auth F40],
ZA [auth F8]
IPR017389Nucleoporin, NUP53Family
WA [auth F],
XA [auth F24],
YA [auth F40],
ZA [auth F8]
IPR007846RNA-recognition motif (RRM) Nup35-type domainDomain
WA [auth F],
XA [auth F24],
YA [auth F40],
ZA [auth F8]
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
WA [auth F],
XA [auth F24],
YA [auth F40],
ZA [auth F8]
IPR035979RNA-binding domain superfamilyHomologous Superfamily
UA [auth E],
VA [auth E8]
IPR019049Nucleoporin protein Ndc1-NupFamily
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2Homologous Superfamily
IPR042533Nucleoporin, Nup155-like, C-terminal, subdomain 1Homologous Superfamily
IPR042538Nucleoporin, Nup155-like, C-terminal, subdomain 3Homologous Superfamily
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
IPR004870Nucleoporin, Nup155-likeFamily
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR022011Nup358/RanBP2 E3 ligase domainDomain
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR011993PH-like domain superfamilyHomologous Superfamily
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR019734Tetratricopeptide repeatRepeat
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR036443Zinc finger, RanBP2-type superfamilyHomologous Superfamily
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR000156Ran binding domainDomain
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR001876Zinc finger, RanBP2-typeDomain
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
IPR045255Ran binding protein RanBP1-likeFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
AB [auth G],
BB [auth G8]
:  Q9NXE4
IC [auth c]:  Q5JVF3
NC [auth h8],
QC [auth h]
:  O15504
AD [auth U16],
BD [auth U24],
CD [auth U8],
ZC [auth U]
:  P52948
AE [auth Q16],
BE [auth Q24],
CE [auth Q8],
ZD [auth Q]
:  Q8NFH3
JA [auth C],
KA [auth C16],
LA [auth C24],
MA [auth C32],
NA [auth C8]
:  Q92621
HA [auth B],
IA [auth B8]
:  Q5SRE5
:  Q8N1F7
:  Q9UKX7
T [auth 7]:  O60318
DE [auth T],
EE [auth T8]
:  Q8WYP5
P [auth 4],
Q [auth 48]
:  Q9NRG9
VD [auth P],
WD [auth P16],
XD [auth P24],
YD [auth P8]
:  Q9BW27
RD [auth O],
SD [auth O16],
TD [auth O24],
UD [auth O8]
:  Q96EE3
ND [auth N],
OD [auth N16],
PD [auth N24],
QD [auth N8]
:  P55735
:  P37198
FD [auth Z],
GD [auth Z8]
:  Q96HA1
DD [auth V],
ED [auth V8]
:  P35658
VC [auth I],
WC [auth I16],
XC [auth I24],
YC [auth I8]
:  Q9BVL2
RC [auth H],
SC [auth H16],
TC [auth H24],
UC [auth H8]
:  Q7Z3B4
N [auth 2],
O [auth 3],
R [auth 5],
S [auth 6]
:  P12270
MC [auth g8],
PC [auth g]
:  Q53GS7
LC [auth f8],
OC [auth f]
:  Q9UMR2
KC [auth e]:  Q13838
JC [auth d]:  P60896
EC [auth b],
FC [auth b16],
GC [auth b24],
HC [auth b8]
:  Q9NPA8
DC [auth a]:  P41208
AC [auth Y],
BC [auth Y16],
CC [auth Y8]
:  P49790
YB [auth X],
ZB [auth X8]
:  Q96SK2
:  Q8TEM1
WB [auth W],
XB [auth W8]
:  Q99567
SB [auth S],
TB [auth S16],
UB [auth S24],
VB [auth S8]
:  Q8NFH4
OB [auth R],
PB [auth R16],
QB [auth R24],
RB [auth R8]
:  Q12769
KB [auth M],
LB [auth M16],
MB [auth M24],
NB [auth M8]
:  P52948
GB [auth L],
HB [auth L16],
IB [auth L24],
JB [auth L8]
:  P57740
CB [auth K],
DB [auth K16],
EB [auth K24],
FB [auth K8]
:  Q8WUM0
WA [auth F],
XA [auth F24],
YA [auth F40],
ZA [auth F8]
:  Q8NFH5
UA [auth E],
VA [auth E8]
:  Q9BTX1
:  O75694
A [auth 0],
B [auth 016],
C [auth 024],
D [auth 032],
E [auth 08]
:  P49792