8W7S | pdb_00008w7s

Yeast replisome in state IV

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 3]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
B [auth 3]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
B [auth 3]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
B [auth 3]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
C [auth 4]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
C [auth 4]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
C [auth 4]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
C [auth 4]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
D [auth 5]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
D [auth 5]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
D [auth 5]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
D [auth 5]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
E [auth 6]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
E [auth 6]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
E [auth 6]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
E [auth 6]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
F [auth 7]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
F [auth 7]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
F [auth 7]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
F [auth 7]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
G [auth A]PF05916GINS complex protein helical bundle domain (Sld5)GINS complex protein helical bundle domainThis entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ...This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase [4].
Domain
H [auth B]PF05916GINS complex protein helical bundle domain (Sld5)GINS complex protein helical bundle domainThis entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ...This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase [4].
Domain
I [auth C]PF05916GINS complex protein helical bundle domain (Sld5)GINS complex protein helical bundle domainThis entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ...This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase [4].
Domain
I [auth C]PF22466PSF3 N-terminal domain (PSF3_N)PSF3 N-terminal domainThis entry represents the GINS/PriA/YqbF domain, which is found in the N-terminal region of the GINS complex protein. The GINS complex is crucial for the establishment of DNA replication forks and replisome progression in eukaryotes. The crystal stru ...This entry represents the GINS/PriA/YqbF domain, which is found in the N-terminal region of the GINS complex protein. The GINS complex is crucial for the establishment of DNA replication forks and replisome progression in eukaryotes. The crystal structure of the human GINS complex reveals a heterotetrameric assembly with a pseudo symmetrical layered structure. The complex consists of two heterodimers that create four subunit-subunit interfaces. The subunit structures of the heterodimers consist of two alternating domains, an alpha-helix-rich (A) domain Pfam:PF05916 and a beta-strand-rich (B) domain (this entry).
Domain
J [auth D]PF05916GINS complex protein helical bundle domain (Sld5)GINS complex protein helical bundle domainThis entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3) ...This entry represents the C-terminal alpha helical bundle domain. The eukaryotic GINS complex is essential for the initiation and elongation phases of DNA replication [1-3]. It consists of four paralogous protein subunits (Sld5, Psf1, Psf2 and Psf3), all of which are included in this family. The GINS complex is conserved from yeast to humans, and has been shown in human to bind directly to DNA primase [4].
Domain
J [auth D]PF16922DNA replication complex GINS protein SLD5 C-terminus (SLD5_C)DNA replication complex GINS protein SLD5 C-terminusThe C-terminal domain of DNA replication complex GINS protein SLD5 is important in the assembly of the GINS complex, a complex which is involved in initiation of DNA replication and progression of DNA replication forks [1]. Domain
K [auth E]PF02724CDC45 (CDC45)CDC45- Family
L [auth F],
M [auth G],
N [auth H]		PF12341Minichromosome loss protein, Mcl1, middle region (Mcl1_mid)Minichromosome loss protein, Mcl1, middle region- Repeat
L [auth F],
M [auth G],
N [auth H]		PF20946DNA polymerase alpha-binding protein Ctf4, C-terminal domain (Ctf4_C)DNA polymerase alpha-binding protein Ctf4, C-terminal domainThis domain is found at the C-terminal end of DNA polymerase alpha- binding protein Ctf4 from yeast, its human orthologue AND1, and similar proteins from eukaryotes. This accessory factor for DNA replication plays a role in accurately duplicating the ...This domain is found at the C-terminal end of DNA polymerase alpha- binding protein Ctf4 from yeast, its human orthologue AND1, and similar proteins from eukaryotes. This accessory factor for DNA replication plays a role in accurately duplicating the genome in vivo. This domain folds into a helical extension that is linked to the beta-propeller domain (Pfam:PF12341) and protrudes from one face of the disk-shaped trimer formed by the protein. It is essential for binding of dynamic partner proteins, such as Pol alpha-primase [1-4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]DNA replication licensing factor MCM2---
B [auth 3]DNA replication licensing factor MCM3
C [auth 4]DNA replication licensing factor MCM4
D [auth 5]Minichromosome maintenance protein 5
E [auth 6]DNA replication licensing factor MCM6
F [auth 7]DNA replication licensing factor MCM7
G [auth A]DNA replication complex GINS protein PSF1-
H [auth B]DNA replication complex GINS protein PSF2-
I [auth C]DNA replication complex GINS protein PSF3-
J [auth D]DNA replication complex GINS protein SLD5-
K [auth E]Cell division control protein 45
L [auth F],
M [auth G],
N [auth H]		DNA polymerase alpha-binding protein
O [auth I]DNA (71-mer)---
P [auth N]DNA polymerase epsilon subunit B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 3]IPR031327Mini-chromosome maintenance proteinFamily
B [auth 3]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
B [auth 3]IPR003593AAA+ ATPase domainDomain
B [auth 3]IPR001208MCM domainDomain
B [auth 3]IPR041562MCM, AAA-lid domainDomain
B [auth 3]IPR054007MCM3 winged helix domainDomain
B [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 3]IPR027925MCM, N-terminal domainDomain
B [auth 3]IPR056575MCM3-like, winged helix domainDomain
B [auth 3]IPR008046DNA replication licensing factor Mcm3Family
B [auth 3]IPR033762MCM OB domainDomain
B [auth 3]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth 4]IPR031327Mini-chromosome maintenance proteinFamily
C [auth 4]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
C [auth 4]IPR001208MCM domainDomain
C [auth 4]IPR041562MCM, AAA-lid domainDomain
C [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 4]IPR027925MCM, N-terminal domainDomain
C [auth 4]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
C [auth 4]IPR008047Mini-chromosome maintenance complex protein 4Family
C [auth 4]IPR033762MCM OB domainDomain
C [auth 4]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth 5]IPR031327Mini-chromosome maintenance proteinFamily
D [auth 5]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
D [auth 5]IPR001208MCM domainDomain
D [auth 5]IPR041562MCM, AAA-lid domainDomain
D [auth 5]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 5]IPR054125MCM5, C-terminal domainDomain
D [auth 5]IPR027925MCM, N-terminal domainDomain
D [auth 5]IPR033762MCM OB domainDomain
D [auth 5]IPR008048DNA replication licensing factor Mcm5Family
D [auth 5]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth 6]IPR008049DNA replication licensing factor Mcm6Family
E [auth 6]IPR041024Mcm6, C-terminal winged-helix domainDomain
E [auth 6]IPR031327Mini-chromosome maintenance proteinFamily
E [auth 6]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
E [auth 6]IPR001208MCM domainDomain
E [auth 6]IPR041562MCM, AAA-lid domainDomain
E [auth 6]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 6]IPR027925MCM, N-terminal domainDomain
E [auth 6]IPR033762MCM OB domainDomain
E [auth 6]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth 7]IPR031327Mini-chromosome maintenance proteinFamily
F [auth 7]IPR008050DNA replication licensing factor Mcm7Family
F [auth 7]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
F [auth 7]IPR003593AAA+ ATPase domainDomain
F [auth 7]IPR001208MCM domainDomain
F [auth 7]IPR041562MCM, AAA-lid domainDomain
F [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth 7]IPR027925MCM, N-terminal domainDomain
F [auth 7]IPR033762MCM OB domainDomain
F [auth 7]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth A]IPR021151GINS subunit, domain ADomain
G [auth A]IPR005339GINS complex, subunit Psf1Family
G [auth A]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
G [auth A]IPR056783DNA replication complex GINS protein PSF1, C-terminal domainDomain
H [auth B]IPR056784DNA replication complex GINS protein PSF2, N-terminal domainDomain
H [auth B]IPR007257DNA replication complex GINS protein Psf2Family
H [auth B]IPR021151GINS subunit, domain ADomain
H [auth B]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
I [auth C]IPR055221DNA replication complex GINS protein PSF3, N-terminal domainDomain
I [auth C]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
I [auth C]IPR021151GINS subunit, domain ADomain
I [auth C]IPR010492GINS complex, subunit Psf3Family
I [auth C]IPR038437GINS complex, subunit Psf3 superfamilyHomologous Superfamily
J [auth D]IPR008591GINS complex subunit Sld5Family
J [auth D]IPR021151GINS subunit, domain ADomain
J [auth D]IPR038749GINS complex protein Sld5, alpha-helical domainDomain
J [auth D]IPR031633DNA replication complex GINS protein SLD5, C-terminalDomain
J [auth D]IPR036224GINS, helical bundle-like domain superfamilyHomologous Superfamily
K [auth E]IPR003874CDC45Family
L [auth F],
M [auth G],
N [auth H]		IPR022100WDHD1/CFT4, second beta-propellerDomain
L [auth F],
M [auth G],
N [auth H]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth F],
M [auth G],
N [auth H]		IPR048591WDHD1/CFT4, helical bundleDomain
L [auth F],
M [auth G],
N [auth H]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth N]IPR016266DNA polymerase epsilon, subunit BFamily
P [auth N]IPR007185DNA polymerase alpha/delta/epsilon, subunit BDomain