7EVN | pdb_00007evn

The cryo-EM structure of the DDX42-SF3b complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth A]SCOP2B SuperfamilyWD40 repeat-like 8052534 3001694 SCOP2B (2022-06-29)
D [auth A]SCOP2B SuperfamilyWD40 repeat-like 8052535 3001694 SCOP2B (2022-06-29)
D [auth A]SCOP2B SuperfamilyWD40 repeat-like 8052534 3001694 SCOP2B (2022-06-29)
D [auth A]SCOP2B SuperfamilyWD40 repeat-like 8051197 3001694 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyTriquetra zinc finger motif 8051848 3002040 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth A]CPSF_A_Ne7evnA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
D [auth A]MMS1_N_Ce7evnA2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
D [auth A]MMS1_N_Ne7evnA4 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
D [auth A]CPSF_A_Ce7evnA3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
C [auth D]PHF5e7evnD1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: PHD finger-like domain-containing protein 5AF: PHF5ECOD (1.6)
B [auth C]KOG0213e7evnC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG0213ECOD (1.6)
A [auth B]SF3b10e7evnB1 A: alpha arraysX: RDS3 complex subunit 10 (From Topology)H: RDS3 complex subunit 10 (From Topology)T: RDS3 complex subunit 10F: SF3b10ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth A]2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain HCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
D [auth A]PF10433RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st)RSE1/DDB1/CPSF1 first beta-propeller- Repeat
D [auth A]PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat
B [auth C]PF22646PPP2R1A-like HEAT repeat (PPP2R1A-like_HEAT)PPP2R1A-like HEAT repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ATP-dependent RNA helicase DDX42
D [auth A]Splicing factor 3B subunit 3
C [auth D]PHD finger-like domain-containing protein 5A
B [auth C]Splicing factor 3B subunit 1
A [auth B]Splicing factor 3B subunit 5

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ86XP3
D [auth A]PharosQ15393
C [auth D]PharosQ7RTV0
B [auth C]PharosO75533
A [auth B]PharosQ9BWJ5