1ZMQ | pdb_00001zmq

Crystal structure of human alpha-defensin-6

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	UNK_F_TYPE	e1zmqD1	A: few secondary structure elements	X: Defensin-like	H: Defensin-related	T: Defensin-related	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e1zmqC1	A: few secondary structure elements	X: Defensin-like	H: Defensin-related	T: Defensin-related	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e1zmqB1	A: few secondary structure elements	X: Defensin-like	H: Defensin-related	T: Defensin-related	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e1zmqA1	A: few secondary structure elements	X: Defensin-like	H: Defensin-related	T: Defensin-related	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00323	Mammalian defensin (Defensin_1)	Mammalian defensin		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Defensin 6	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	biological process involved in interspecies interaction between organisms innate immune response in mucosa response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus biological process involved in interspecies interaction between organisms innate immune response in mucosa response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus mucosal immune response organ or tissue specific immune response humoral immune response antimicrobial humoral response antimicrobial humoral immune response mediated by antimicrobial peptide defense response to fungus response to fungus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing defense response to Gram-negative bacterium defense response to bacterium response to bacterium antibacterial humoral response cellular response to stimulus response to lipid cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to biotic stimulus cellular response to chemical stimulus response to chemical cellular response to lipid response to molecule of bacterial origin disruption of cellular anatomical structure in another organism disruption of plasma membrane integrity in another organism defense response to Gram-positive bacterium	membrane-bounded organelle intracellular anatomical structure Golgi apparatus membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen Golgi lumen intracellular organelle cellular anatomical structure organelle lumen organelle cytoplasm extracellular region membrane-bounded organelle intracellular anatomical structure Golgi apparatus membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen Golgi lumen intracellular organelle cellular anatomical structure organelle lumen organelle cytoplasm extracellular region transport vesicle intracellular vesicle cytoplasmic vesicle vesicle extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR006080	Beta/alpha-defensin, C-terminal	Domain
A, B, C, D	IPR016327	Alpha-defensin	Family
A, B, C, D	IPR006081	Alpha-defensin, C-terminal	Domain
A, B, C, D	IPR002366	Alpha-defensin, N-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q01524	ulcerative colitis Crohn disease lung cancer diabetes mellitus psoriasis IgA glomerulonephritis

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Defensin-like	Vertebrate defensin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.