9D9D | pdb_00009d9d

Candida albicans Hsp90 nucleotide binding domain in complex with BRI2216

• PDB DOI: https://doi.org/10.2210/pdb9D9D/pdb

• Classification: CHAPERONE
• Organism(s): Candida albicans SC5314
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-08-21 Released: 2025-09-10 
• Deposition Author(s): Kuntz, D.A., Prive, G.G.
• Funding Organization(s): Canadian Institutes of Health Research (CIHR), Canada Foundation for Innovation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.09 Å
• R-Value Free: 
  0.267 (Depositor), 0.268 (DCC) 
• R-Value Work: 
  0.218 (Depositor), 0.218 (DCC) 
• R-Value Observed: 
  0.221 (Depositor) 

Starting Model: experimental

Literature

Candida albicans Hsp90 nucleotide binding domain complexes Final Title 'To Be Determined'

Kuntz, D.A., Prive, G.G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: homology

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 50.56 kDa 
• Atom Count: 3,737 
• Modeled Residue Count: 430 
• Deposited Residue Count: 442 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heat shock protein 90 homolog	A, B	221	Candida albicans SC5314	Mutation(s): 0  Gene Names: HSP90, CAALFM_C702030WA, CaJ7.0234, CaO19.13868, CaO19.6515
UniProt
Find proteins for P46598 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore P46598  Go to UniProtKB:  P46598

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A1A28 (Subject of Investigation/LOI)	C [auth A]	(1P)-3-amino-N-{1-[(2R)-2-(2,4-difluorophenyl)-2-hydroxy-3-(1H-1,2,4-triazol-1-yl)propyl]piperidin-4-yl}-2-oxo-1-(4-phenyl-3,4-dihydro-2H-1,4-benzoxazin-6-yl)-1,2-dihydrothieno[2,3-b]pyrazine-6-carboxamide C37 H35 F2 N9 O4 S LAWFFQRHZBSHCM-DIPNUNPCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.09 Å
• R-Value Free:  0.267 (Depositor), 0.268 (DCC) 
• R-Value Work:  0.218 (Depositor), 0.218 (DCC) 
• R-Value Observed: 0.221 (Depositor) 

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.041	α = 90
b = 74.041	β = 90
c = 108.811	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
CrysalisPro	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-09-10 
Deposition Author(s): Kuntz, D.A., Prive, G.G.

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Funding Organization	Location	Grant Number
Canadian Institutes of Health Research (CIHR)	Canada	--
Canada Foundation for Innovation	Canada	--

Revision History  

• Version 1.0: 2025-09-10
  Type: Initial release