XI6

DZNep

Created:	2023-11-06
Last modified:	2024-11-06

Find Related PDB Entry
1 entries where XI6 is found as a standalone ligand

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	33
Chiral Atom Count	3
Bond Count	35
Aromatic Bond Count	10

2D diagram of XI6

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	DZNep
Synonyms	(1~{S},2~{R},5~{R})-5-(4-azanylimidazo[4,5-c]pyridin-1-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol; 3-Deazaneplanocin
Systematic Name (OpenEye OEToolkits)	(1~{S},2~{R},5~{R})-5-(4-azanylimidazo[4,5-c]pyridin-1-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol
Formula	C₁₂ H₁₄ N₄ O₃
Molecular Weight	262.265
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	CACTVS	3.385	Nc1nccc2n(cnc12)[CH]3C=C(CO)[CH](O)[CH]3O
SMILES	OpenEye OEToolkits	2.0.7	c1cnc(c2c1n(cn2)C3C=C(C(C3O)O)CO)N
Canonical SMILES	CACTVS	3.385	Nc1nccc2n(cnc12)[C@@H]3C=C(CO)[C@@H](O)[C@H]3O
Canonical SMILES	OpenEye OEToolkits	2.0.7	c1cnc(c2c1n(cn2)[C@@H]3C=C([C@H]([C@H]3O)O)CO)N
InChI	InChI	1.06	InChI=1S/C12H14N4O3/c13-12-9-7(1-2-14-12)16(5-15-9)8-3-6(4-17)10(18)11(8)19/h1-3,5,8,10-11,17-19H,4H2,(H2,13,14)/t8-,10-,11+/m1/s1
InChIKey	InChI	1.06	OMKHWTRUYNAGFG-IEBDPFPHSA-N

Related Resource References

Resource Name	Reference
Pharos	CHEMBL154745
PubChem	73087
ChEMBL	CHEMBL154745
ChEBI	CHEBI:231299
CCDC/CSD	JANGAG

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.