8YL: (2S,3R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfan
yl-3-methyl-2,3-dihydro-1H-pyrrole-5-carboxylic acid
8YL is a Ligand Of Interest in 5YPM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5YPM_8YL_D_303 | 57% | 17% | 0.16 | 0.936 | 2.18 | 1.45 | 3 | 3 | 0 | 0 | 100% | 0.86 |
| 5YPM_8YL_F_303 | 53% | 17% | 0.153 | 0.915 | 2.18 | 1.44 | 3 | 4 | 0 | 0 | 100% | 0.98 |
| 5YPM_8YL_C_303 | 48% | 17% | 0.158 | 0.901 | 2.2 | 1.44 | 3 | 3 | 2 | 0 | 100% | 0.88 |
| 5YPM_8YL_A_303 | 48% | 18% | 0.161 | 0.902 | 2.19 | 1.34 | 3 | 4 | 0 | 0 | 100% | 0.98 |
| 5YPM_8YL_E_303 | 46% | 19% | 0.176 | 0.91 | 2.2 | 1.31 | 3 | 3 | 0 | 0 | 100% | 0.88 |
| 5YPM_8YL_G_303 | 40% | 14% | 0.169 | 0.881 | 2.24 | 1.67 | 3 | 6 | 3 | 0 | 100% | 0.98 |
| 5YPM_8YL_B_303 | 29% | 14% | 0.216 | 0.875 | 2.2 | 1.66 | 3 | 5 | 2 | 0 | 100% | 0.92 |
| 5YPM_8YL_H_303 | 11% | 17% | 0.279 | 0.793 | 2.22 | 1.41 | 3 | 3 | 2 | 0 | 100% | 0.79 |
| 5N0H_8YL_A_301 | 45% | 18% | 0.18 | 0.91 | 1.41 | 2.13 | 6 | 5 | 3 | 0 | 100% | 0.6 |
| 7LLB_8YL_A_301 | 29% | 49% | 0.198 | 0.854 | 0.89 | 1.09 | 1 | 2 | 2 | 0 | 100% | 1 |
| 6ZW2_8YL_A_402 | 23% | 41% | 0.19 | 0.875 | 0.72 | 1.56 | - | 1 | 0 | 0 | 67% | 0.25 |
