Experiment: 9HCI

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4DX5

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	290	0.05M ADA, pH 6.5, 0.2M ammonium sulfate, 8% PEG4000, 5.1% Glycerol

Crystal Properties
Matthews coefficient	Solvent content
3.87	68.23

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 145.71	α = 90
b = 165.3	β = 90
c = 244.89	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH		2007-03-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	0.99997	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.6	47.69	99.94	0.982	7.09	8.4		181397

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.693	99.99		0.683

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.6	47.69	172106	9291	99.95	0.19177	0.18974	0.197	0.2299	0.2329	RANDOM	45.783

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.18			0.05		1.12

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.029
r_long_range_B_other	11.455
r_long_range_B_refined	11.441
r_scangle_other	9.967
r_scbond_other	7.626
r_scbond_it	7.621
r_mcangle_it	6.293
r_mcangle_other	6.293
r_dihedral_angle_1_deg	5.927
r_mcbond_it	4.423

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.029
r_long_range_B_other	11.455
r_long_range_B_refined	11.441
r_scangle_other	9.967
r_scbond_other	7.626
r_scbond_it	7.621
r_mcangle_it	6.293
r_mcangle_other	6.293
r_dihedral_angle_1_deg	5.927
r_mcbond_it	4.423
r_mcbond_other	4.421
r_angle_refined_deg	1.289
r_angle_other_deg	0.461
r_chiral_restr	0.061
r_bond_refined_d	0.012
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	25975
Nucleic Acid Atoms
Solvent Atoms	1215
Heterogen Atoms	576

Software

Software
Software Name	Purpose
PDB-REDO	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.