1R6B | pdb_00001r6b

High resolution crystal structure of ClpA

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	294	hepes, potassium chloride, magnesium chloride, isopropanol, PEG 4000, glycerol, ADP, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K

Crystal Properties
Matthews coefficient	Solvent content
2.56	51.93

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 124.11	α = 90
b = 124.11	β = 90
c = 97.049	γ = 120

Symmetry
Space Group	P 65

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 4	mirrors	2000-06-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	NSLS BEAMLINE X9B	0.98	NSLS	X9B

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.25	50	0.931	0.032	0.032	21.9	2.7	37627	37627	0.5	0.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.25	2.33	0.79		0.349	0.303	1.36	2.9	3170

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Free (Depositor)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MIR	THROUGHOUT	2.25	20	37627	36841	773	93.85	0.23504	0.23415	0.27784	RANDOM	59.217

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.05	-0.52		-1.05		1.57

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	16.332
r_scangle_it	7.666
r_scbond_it	5.449
r_mcangle_it	3.292
r_dihedral_angle_1_deg	2.305
r_mcbond_it	1.349
r_angle_refined_deg	1.144
r_chiral_restr	0.254
r_nbd_refined	0.192
r_symmetry_hbond_refined	0.147

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	16.332
r_scangle_it	7.666
r_scbond_it	5.449
r_mcangle_it	3.292
r_dihedral_angle_1_deg	2.305
r_mcbond_it	1.349
r_angle_refined_deg	1.144
r_chiral_restr	0.254
r_nbd_refined	0.192
r_symmetry_hbond_refined	0.147
r_symmetry_vdw_refined	0.139
r_xyhbond_nbd_refined	0.137
r_bond_refined_d	0.018
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5506
Nucleic Acid Atoms
Solvent Atoms	60
Heterogen Atoms	57

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
MLPHARE	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.