9TPH | pdb_00009tph

Survivin 1-127 in complex with a molecular tweezer-Histone-H3-peptide conjugate

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Inhibitor of apoptosis (IAP) repeat	8035906	3001510	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Inhibitor of apoptosis (IAP) repeat	8035906	3001510	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00653	Inhibitor of Apoptosis domain (BIR)	Inhibitor of Apoptosis domain	BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, incl ...	BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin (Swiss:O15392) [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Baculoviral IAP repeat-containing protein 5	cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding small GTPase binding protein binding enzyme binding GTPase binding enzyme regulator activity molecular function inhibitor activity peptidase regulator activity cation binding transition metal ion binding ion binding binding metal ion binding cobalt ion binding small molecule binding small GTPase binding protein binding enzyme binding GTPase binding enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity cysteine-type endopeptidase inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity protein-folding chaperone binding cytoskeletal protein binding microtubule binding tubulin binding identical protein binding protein heterodimerization activity protein dimerization activity cysteine-type endopeptidase inhibitor activity involved in apoptotic process cysteine-type endopeptidase regulator activity involved in apoptotic process protein homodimerization activity zinc ion binding	cellular process cell division cellular response to stimulus positive regulation of cell communication regulation of cellular process regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division cellular process cell division cellular response to stimulus positive regulation of cell communication regulation of cellular process regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication regulation of cell cycle checkpoint negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction cell cycle mitotic sister chromatid separation chromosome segregation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling regulation of biological process negative regulation of cellular component organization regulation of cell cycle process regulation of spindle checkpoint sister chromatid segregation positive regulation of intracellular signal transduction regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of response to stimulus positive regulation of mitotic cell cycle spindle assembly checkpoint regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of cellular component organization regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle regulation of mitotic spindle checkpoint signaling regulation of mitotic cell cycle spindle assembly checkpoint spindle assembly checkpoint signaling positive regulation of biological process cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle cellular component organization positive regulation of response to stimulus regulation of mitotic cell cycle regulation of intracellular signal transduction negative regulation of cellular process mitotic sister chromatid segregation positive regulation of cell cycle process negative regulation of mitotic metaphase/anaphase transition cellular component organization or biogenesis regulation of cell cycle negative regulation of chromosome separation positive regulation of cellular process cell cycle process positive regulation of spindle checkpoint mitotic nuclear division regulation of signaling negative regulation of mitotic cell cycle phase transition organelle fission biological regulation chromosome organization negative regulation of cell cycle process positive regulation of cell cycle cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling organelle organization nuclear division negative regulation of chromosome segregation negative regulation of nuclear division negative regulation of organelle organization chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle regulation of cell communication metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition positive regulation of signaling exit from mitosis positive regulation of mitotic cell cycle phase transition positive regulation of exit from mitosis positive regulation of mitotic cell cycle positive regulation of cell cycle phase transition regulation of exit from mitosis apoptotic process cell death programmed cell death localization macromolecule localization protein-containing complex localization chromosome localization organelle localization multicellular organismal process system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus positive regulation of cell division cytoskeleton-dependent cytokinesis positive regulation of mitotic cytokinesis mitotic cytokinesis regulation of cell division regulation of mitotic cytokinesis positive regulation of cytokinesis regulation of cytokinesis cytokinesis cell cycle G2/M phase transition G2/M transition of mitotic cell cycle RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process mitotic spindle elongation spindle midzone assembly spindle elongation microtubule cytoskeleton organization membraneless organelle assembly cellular component biogenesis cellular component assembly microtubule cytoskeleton organization involved in mitosis spindle organization organelle assembly spindle assembly mitotic spindle organization mitotic spindle assembly microtubule-based process mitotic spindle midzone assembly cytoskeleton organization negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death negative regulation of apoptotic process cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation positive regulation of mitotic sister chromatid separation positive regulation of chromosome separation regulation of localization mitotic metaphase chromosome alignment metaphase chromosome alignment regulation of attachment of mitotic spindle microtubules to kinetochore regulation of attachment of spindle microtubules to kinetochore positive regulation of chromosome segregation attachment of spindle microtubules to kinetochore attachment of mitotic spindle microtubules to kinetochore positive regulation of attachment of spindle microtubules to kinetochore positive regulation of attachment of mitotic spindle microtubules to kinetochore regulation of metaphase plate congression	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle midzone microtubule cytoskeleton cytoplasm cytosol microtubule organizing center interphase microtubule organizing center intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle midzone microtubule cytoskeleton cytoplasm cytosol microtubule organizing center interphase microtubule organizing center membrane-bounded organelle nucleus membrane-enclosed lumen nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen organelle lumen nuclear lumen polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex midbody centriole chromosome, centromeric region chromosomal region nucleoplasm protein-containing complex chromosome passenger complex microtubule associated complex kinetochore condensed chromosome, centromeric region condensed chromosome cytoplasmic microtubule survivin complex nuclear protein-containing complex spindle microtubule
C, D	Histone-H3-peptide conjugated to molecular tweezer	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001370	BIR repeat	Repeat
A, B	IPR051190	Baculoviral IAP repeat-containing	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O15392	acute megakaryoblastic leukemia renal cell carcinoma breast carcinoma malignant colon neoplasm non-small cell lung carcinoma adult T-cell leukemia/lymphoma chronic myelogenous leukemia, BCR-ABL1 positive endometrial carcinoma ovarian cancer adenocarcinoma granular cell carcinoma tubular adenocarcinoma cervical cancer colorectal cancer papillary renal cell carcinoma acute megakaryoblastic leukemia renal cell carcinoma breast carcinoma malignant colon neoplasm non-small cell lung carcinoma adult T-cell leukemia/lymphoma chronic myelogenous leukemia, BCR-ABL1 positive endometrial carcinoma ovarian cancer adenocarcinoma granular cell carcinoma tubular adenocarcinoma cervical cancer colorectal cancer papillary renal cell carcinoma acute promyelocytic leukemia sarcomatoid renal cell carcinoma squamous cell carcinoma chromophobe renal cell carcinoma collecting duct carcinoma breast cancer colonic neoplasm Malignant neoplasm of ovary cribriform carcinoma of breast nasopharyngeal carcinoma pancreatic intraductal papillary-mucinous neoplasm gastric cancer primitive neuroectodermal tumor adrenal cortex carcinoma IgA glomerulonephritis small cell lung carcinoma atypical teratoid rhabdoid tumor lung cancer clear cell renal carcinoma ductal breast carcinoma in situ ovarian neoplasm gastric neoplasm psoriasis hepatocellular carcinoma invasive ductal breast carcinoma benign colon neoplasm lung adenocarcinoma cancer malignant ependymoma colorectal carcinoma malignant pancreatic neoplasm cribriform carcinoma medulloblastoma endometrial cancer osteosarcoma pancreatic intraductal papillary-mucinous carcinoma endometriosis periodontitis acute T cell leukemia glioblastoma renal carcinoma hereditary diffuse gastric adenocarcinoma small cell carcinoma atopic eczema large cell medulloblastoma tuberculosis lung benign neoplasm malignant glioma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C, D	EE0
C, D	NH2	RESID: AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 PSI-MOD : L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109
C, D	TPO	Parent Component: THR RESID: AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 , AA0038 PSI-MOD : L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109 , O-phospho-L-threonine MOD:00047

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.