6J0B | pdb_00006j0b

Cryo-EM Structure of an Extracellular Contractile Injection System, PVC sheath-tube complex in extended state

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth l]	UNK_F_TYPE	e6j0bl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
W [auth k]	UNK_F_TYPE	e6j0bk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
V [auth j]	UNK_F_TYPE	e6j0bj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
U [auth i]	UNK_F_TYPE	e6j0bi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
T [auth h]	UNK_F_TYPE	e6j0bh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
S [auth g]	UNK_F_TYPE	e6j0bg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
R [auth f]	UNK_F_TYPE	e6j0bf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
Q [auth e]	UNK_F_TYPE	e6j0be1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
P [auth d]	UNK_F_TYPE	e6j0bd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
O [auth c]	UNK_F_TYPE	e6j0bc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
N [auth b]	UNK_F_TYPE	e6j0bb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
M [auth a]	UNK_F_TYPE	e6j0ba1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UNK_F_TYPE	ECOD (1.6)
L	Phage_sheath_1C	e6j0bL2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
L	Phage_sheath_1	e6j0bL1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
K	Phage_sheath_1C	e6j0bK2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
K	Phage_sheath_1	e6j0bK1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
J	Phage_sheath_1C	e6j0bJ2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
J	Phage_sheath_1	e6j0bJ1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
I	Phage_sheath_1C	e6j0bI2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
I	Phage_sheath_1	e6j0bI1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
H	Phage_sheath_1C	e6j0bH2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
H	Phage_sheath_1	e6j0bH1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
G	Phage_sheath_1C	e6j0bG2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
G	Phage_sheath_1	e6j0bG1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
F	Phage_sheath_1C	e6j0bF2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
F	Phage_sheath_1	e6j0bF1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
E	Phage_sheath_1C	e6j0bE2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
E	Phage_sheath_1	e6j0bE1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
D	Phage_sheath_1C	e6j0bD2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
D	Phage_sheath_1	e6j0bD1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
C	Phage_sheath_1C	e6j0bC2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
C	Phage_sheath_1	e6j0bC1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
B	Phage_sheath_1C	e6j0bB2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
B	Phage_sheath_1	e6j0bB1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)
A	Phage_sheath_1C	e6j0bA2	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: Phage_sheath_1C	ECOD (1.6)
A	Phage_sheath_1	e6j0bA1	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: Phage_sheath_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF06841	T4-like virus tail tube protein gp19 (Phage_T4_gp19)	T4-like virus tail tube protein gp19	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l]	Pvc1	structural molecule activity	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Pvc2	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l]	IPR011747	Conserved hypothetical protein CHP02241	Family
M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], M [auth a], N [auth b], O [auth c], P [auth d], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l]	IPR010667	Bacteriophage T4, Gp19, tail tube	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR052042	Tail sheath structural protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR020287	Tail sheath protein, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR035089	Tail sheath protein, subtilisin-like domain	Domain