5HT0 | pdb_00005ht0

Crystal structure of an Antibiotic_NAT family aminoglycoside acetyltransferase HMB0038 from an uncultured soil metagenomic sample in complex with coenzyme A

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5ht0a_ Alpha and beta proteins (a/b) TTHA0583/YokD-like TTHA0583/YokD-like automated matches automated matches (uncultured bacterium ) [TaxId: 77133 ], SCOPe (2.08)
Bd5ht0b_ Alpha and beta proteins (a/b) TTHA0583/YokD-like TTHA0583/YokD-like automated matches automated matches (uncultured bacterium ) [TaxId: 77133 ], SCOPe (2.08)
Cd5ht0c_ Alpha and beta proteins (a/b) TTHA0583/YokD-like TTHA0583/YokD-like automated matches automated matches (uncultured bacterium ) [TaxId: 77133 ], SCOPe (2.08)
Dd5ht0d_ Alpha and beta proteins (a/b) TTHA0583/YokD-like TTHA0583/YokD-like automated matches automated matches (uncultured bacterium ) [TaxId: 77133 ], SCOPe (2.08)
Ed5ht0e_ Alpha and beta proteins (a/b) TTHA0583/YokD-like TTHA0583/YokD-like automated matches automated matches (uncultured bacterium ) [TaxId: 77133 ], SCOPe (2.08)
Fd5ht0f_ Alpha and beta proteins (a/b) TTHA0583/YokD-like TTHA0583/YokD-like automated matches automated matches (uncultured bacterium ) [TaxId: 77133 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyTTHA0583/YokD-like 8064468 3001081 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTTHA0583/YokD-like 8064468 3001081 SCOP2B (2022-06-29)
CSCOP2 FamilyAminoglycoside 3-N-acetyltransferase-like 8064467 4002431 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyTTHA0583/YokD-like 8064468 3001081 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyTTHA0583/YokD-like 8064468 3001081 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTTHA0583/YokD-like 8064468 3001081 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyTTHA0583/YokD-like 8064468 3001081 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAntibiotic_NATe5ht0A1 A: a/b three-layered sandwichesX: Hypothetical protein TT1679 (From Topology)H: Hypothetical protein TT1679 (From Topology)T: Hypothetical protein TT1679F: Antibiotic_NATECOD (1.6)
BAntibiotic_NATe5ht0B1 A: a/b three-layered sandwichesX: Hypothetical protein TT1679 (From Topology)H: Hypothetical protein TT1679 (From Topology)T: Hypothetical protein TT1679F: Antibiotic_NATECOD (1.6)
CAntibiotic_NATe5ht0C1 A: a/b three-layered sandwichesX: Hypothetical protein TT1679 (From Topology)H: Hypothetical protein TT1679 (From Topology)T: Hypothetical protein TT1679F: Antibiotic_NATECOD (1.6)
DAntibiotic_NATe5ht0D1 A: a/b three-layered sandwichesX: Hypothetical protein TT1679 (From Topology)H: Hypothetical protein TT1679 (From Topology)T: Hypothetical protein TT1679F: Antibiotic_NATECOD (1.6)
EAntibiotic_NATe5ht0E1 A: a/b three-layered sandwichesX: Hypothetical protein TT1679 (From Topology)H: Hypothetical protein TT1679 (From Topology)T: Hypothetical protein TT1679F: Antibiotic_NATECOD (1.6)
FAntibiotic_NATe5ht0F1 A: a/b three-layered sandwichesX: Hypothetical protein TT1679 (From Topology)H: Hypothetical protein TT1679 (From Topology)T: Hypothetical protein TT1679F: Antibiotic_NATECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02522Aminoglycoside 3-N-acetyltransferase (Antibiotic_NAT)Aminoglycoside 3-N-acetyltransferaseThis family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyse the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotic ...This family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyse the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others.
Domain