3V21 | pdb_00003v21

Crystal structure of Type IIF restriction endonuclease Bse634I with cognate DNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d3v21h_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
G	d3v21g_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
F	d3v21f_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
E	d3v21e_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
D	d3v21d_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
C	d3v21c_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
B	d3v21b_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
A	d3v21a_	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Cfr10I/Bse634I	Restriction endonuclease Bse634I	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Restriction endonuclease-like	8038322	3000104	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Bse634I	e3v21H1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
G	Bse634I	e3v21G1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
F	Bse634I	e3v21F1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
E	Bse634I	e3v21E1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
D	Bse634I	e3v21D1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
C	Bse634I	e3v21C1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
B	Bse634I	e3v21B1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)
A	Bse634I	e3v21A1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: Bse634I	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
G	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
F	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
E	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
D	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
C	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
B	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)
A	3.40.91.10	Alpha Beta	3-Layer(aba) Sandwich	Restriction Endonuclease		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF07832	Cfr10I/Bse634I restriction endonuclease (Bse634I)	Cfr10I/Bse634I restriction endonuclease	Cfr10I (Swiss:P56200) and Bse634I (Swiss:Q8RT53) are two Type II restriction endonucleases. They exhibit a conserved tetrameric architecture that is of functional importance, wherein two dimers are arranged 'back-to-back' with their putative DNA-bi ...	Cfr10I (Swiss:P56200) and Bse634I (Swiss:Q8RT53) are two Type II restriction endonucleases. They exhibit a conserved tetrameric architecture that is of functional importance, wherein two dimers are arranged 'back-to-back' with their putative DNA-binding clefts facing opposite directions. These clefts are formed between two monomers that interact, mainly via hydrophobic interactions supported by a few hydrogen bonds, to form a U-shaped dimer. Each monomer is folded to form a compact alpha-beta structure, whose core is made up of a five-stranded mixed beta-sheet.The monomer may be split into separate N-terminal and C-terminal subdomains at a hinge located in helix alpha3 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I, J, K, L, M, I, J, K, L, M, N, O, P, Q [auth R], R [auth S], S [auth V], T [auth X], U [auth Y], V [auth Z]	DNA (5'-D(TPTPCPGPAPCPCPGPGPTPCPGP*A)-3')	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H	Endonuclease Bse634IR	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012415	Restriction endonuclease, type II, Cfr10I/Bse634I	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011335	Restriction endonuclease type II-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.